[HTML][HTML] Open and reproducible neuroimaging: From study inception to publication

G Niso, R Botvinik-Nezer, S Appelhoff, A De La Vega… - NeuroImage, 2022 - Elsevier
Empirical observations of how labs conduct research indicate that the adoption rate of open
practices for transparent, reproducible, and collaborative science remains in its infancy. This …

Towards a biologically annotated brain connectome

V Bazinet, JY Hansen, B Misic - Nature reviews neuroscience, 2023 - nature.com
The brain is a network of interleaved neural circuits. In modern connectomics, brain
connectivity is typically encoded as a network of nodes and edges, abstracting away the rich …

[HTML][HTML] Time-dependent memory transformation in hippocampus and neocortex is semantic in nature

V Krenz, A Alink, T Sommer, B Roozendaal… - Nature …, 2023 - nature.com
Memories undergo a time-dependent neural reorganization, which is assumed to be
accompanied by a transformation from detailed to more gist-like memory. However, the …

[HTML][HTML] The integrity of dopaminergic and noradrenergic brain regions is associated with different aspects of late-life memory performance

MJ Dahl, SL Bachman, S Dutt, S Düzel, NC Bodammer… - Nature Aging, 2023 - nature.com
Abstract Changes in dopaminergic neuromodulation play a key role in adult memory
decline. Recent research has also implicated noradrenaline in shaping late-life memory …

[HTML][HTML] Quality control in functional MRI studies with MRIQC and fMRIPrep

C Provins, E MacNicol, SH Seeley… - Frontiers in …, 2023 - frontiersin.org
The implementation of adequate quality assessment (QA) and quality control (QC) protocols
within the magnetic resonance imaging (MRI) research workflow is resource-and time …

[HTML][HTML] Continuous evaluation of denoising strategies in resting-state fMRI connectivity using fMRIPrep and Nilearn

HT Wang, SL Meisler, H Sharmarke… - PLOS Computational …, 2024 - journals.plos.org
Reducing contributions from non-neuronal sources is a crucial step in functional magnetic
resonance imaging (fMRI) connectivity analyses. Many viable strategies for denoising fMRI …

NetPlotBrain: A Python package for visualizing networks and brains

S Fanton, WH Thompson - Network Neuroscience, 2023 - direct.mit.edu
Visualizations of networks are complex since they are multidimensional and generally
convey large amounts of information. The layout of the visualization can communicate either …

Functional reconfiguration of task-active frontoparietal control network facilitates abstract reasoning

TM Morin, KN Moore, K Isenburg, W Ma… - Cerebral …, 2023 - academic.oup.com
While the brain's functional network architecture is largely conserved between resting and
task states, small but significant changes in functional connectivity support complex …

Voxel‐wise intermodal coupling analysis of two or more modalities using local covariance decomposition

F Hu, SM Weinstein, EB Baller… - Human brain …, 2022 - Wiley Online Library
When individual subjects are imaged with multiple modalities, biological information is
present not only within each modality, but also between modalities–that is, in how modalities …

[PDF][PDF] A reproducible benchmark of resting-state fMRI denoising strategies using fMRIPrep and Nilearn

HT Wang, SL Meisler, H Sharmarke, N Clarke… - bioRxiv, 2023 - neurolibre.org
Reducing contributions from non-neuronal sources is a crucial step in functional magnetic
resonance imaging (fMRI) connectivity analyses. Many viable strategies for denoising fMRI …