Uncovering ecological state dynamics with hidden Markov models

BT McClintock, R Langrock, O Gimenez, E Cam… - Ecology …, 2020 - Wiley Online Library
Ecological systems can often be characterised by changes among a finite set of underlying
states pertaining to individuals, populations, communities or entire ecosystems through time …

Dynamical order and many-body correlations in zebrafish show that three is a crowd

A Zampetaki, Y Yang, H Löwen, CP Royall - Nature Communications, 2024 - nature.com
Zebrafish constitute a convenient laboratory–based biological system for studying collective
behavior. It is possible to interpret a group of zebrafish as a system of interacting agents and …

The emergence of collective obstacle avoidance based on a visual perception mechanism

J Qi, L Bai, Y Xiao, Y Wei, W Wu - Information Sciences, 2022 - Elsevier
Coordinated and ordered collective behaviors that emerge from decentralized and local self-
organizing interactions among individuals widely exists in many biological groups. The …

Go multivariate: recommendations on Bayesian multilevel hidden Markov models with categorical data

S Mildiner Moraga, E Aarts - Multivariate Behavioral Research, 2024 - Taylor & Francis
The multilevel hidden Markov model (MHMM) is a promising method to investigate intense
longitudinal data obtained within the social and behavioral sciences. The MHMM quantifies …

A virtual experiment on pedestrian destination choice: the role of schedules, the environment and behavioural categories

C King, NWF Bode - Royal Society open science, 2022 - royalsocietypublishing.org
Which locations pedestrians decide to visit and in what order drives circulation patterns in
pedestrian infrastructure. Destination choice is understood to arise from individuals trading …

Impact of variable speed on collective movement of animal groups

PP Klamser, L Gómez-Nava, T Landgraf… - Frontiers in …, 2021 - frontiersin.org
The collective dynamics and structure of animal groups has attracted the attention of
scientists across a broad range of fields. A variety of agent-based models have been …

Group chase and escape of biological groups based on a visual perception-decision-propulsion model

J Qi, L Bai, Y Xiao, W Wu, L Liu - IEEE Access, 2020 - ieeexplore.ieee.org
A relatively simple and local interaction between individuals produces coordinated and
ordered collective behaviors that are widespread at all levels of biological groups. Group …

Simulating the effect of measurement errors on pedestrian destination choice model calibration

C King, O Koltsova, NWF Bode - Transportmetrica A: transport …, 2023 - Taylor & Francis
Accurately calibrated pedestrian destination choice models help explain and predict foot
traffic in public places by describing how individuals choose locations to visit. Model …

Effect of exit location on flow of mice under emergency condition

T Zhang, SS Huang, XL Zhang, SX Lu… - Chinese Physics B, 2019 - iopscience.iop.org
The evacuation of crowds in a building has always emerged as a vital issue in many
accidents. The geometrical structure of a room, especially the exit design has a great …

Sample size considerations for bayesian multilevel hidden markov models: A simulation study on multivariate continuous data with highly overlapping component …

J Ginn, SM Moraga, E Aarts - arXiv preprint arXiv:2201.09033, 2022 - arxiv.org
Spurred in part by the ever-growing number of sensors and web-based methods of
collecting data, the use of Intensive Longitudinal Data (ILD) is becoming more common in …