Genetic load: genomic estimates and applications in non-model animals

G Bertorelle, F Raffini, M Bosse, C Bortoluzzi… - Nature Reviews …, 2022 - nature.com
Genetic variation, which is generated by mutation, recombination and gene flow, can reduce
the mean fitness of a population, both now and in the future. This 'genetic load'has been …

Evolution and diversity of transposable elements in vertebrate genomes

CG Sotero-Caio, RN Platt, A Suh… - Genome biology and …, 2017 - academic.oup.com
Transposable elements (TEs) are selfish genetic elements that mobilize in genomes via
transposition or retrotransposition and often make up large fractions of vertebrate genomes …

Deeply conserved synteny and the evolution of metazoan chromosomes

O Simakov, J Bredeson, K Berkoff, F Marletaz… - Science …, 2022 - science.org
Animal genomes show networks of deeply conserved gene linkages whose phylogenetic
scope and chromosomal context remain unclear. Here, we report chromosome-scale …

[HTML][HTML] Deeply conserved synteny resolves early events in vertebrate evolution

O Simakov, F Marlétaz, JX Yue, B O'Connell… - Nature Ecology & …, 2020 - nature.com
Although it is widely believed that early vertebrate evolution was shaped by ancient whole-
genome duplications, the number, timing and mechanism of these events remain elusive …

[HTML][HTML] Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution

Y Nakatani, P Shingate, V Ravi, NE Pillai… - Nature …, 2021 - nature.com
Ancient polyploidization events have had a lasting impact on vertebrate genome structure,
organization and function. Some key questions regarding the number of ancient …

[HTML][HTML] The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

K Du, M Stöck, S Kneitz, C Klopp… - Nature ecology & …, 2020 - nature.com
Sturgeons seem to be frozen in time. The archaic characteristics of this ancient fish lineage
place it in a key phylogenetic position at the base of the~ 30,000 modern teleost fish …

[HTML][HTML] Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

Evolutionary analysis of a complete chicken genome

Z Huang, Z Xu, H Bai, Y Huang… - Proceedings of the …, 2023 - National Acad Sciences
Microchromosomes are prevalent in nonmammalian vertebrates [PD Waters et al., Proc.
Natl. Acad. Sci. USA 118 (2021)], but a few of them are missing in bird genome assemblies …

[HTML][HTML] Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor

AK Redmond, D Casey, MK Gundappa… - Nature …, 2023 - nature.com
Whole genome duplication (WGD) is a dramatic evolutionary event generating many new
genes and which may play a role in survival through mass extinctions. Paddlefish and …

[PDF][PDF] African lungfish genome sheds light on the vertebrate water-to-land transition

K Wang, J Wang, C Zhu, L Yang, Y Ren, J Ruan, G Fan… - Cell, 2021 - cell.com
Lungfishes are the closest extant relatives of tetrapods and preserve ancestral traits linked
with the water-to-land transition. However, their huge genome sizes have hindered …