Rational design of dna hydrogels based on molecular dynamics of polymers

Y Li, R Chen, B Zhou, Y Dong, D Liu - Advanced Materials, 2024 - Wiley Online Library
In recent years, DNA has emerged as a fascinating building material to engineer hydrogel
due to its excellent programmability, which has gained considerable attention in biomedical …

Single-molecule electrical detection: a promising route toward the fundamental limits of chemistry and life science

Y Li, C Yang, X Guo - Accounts of Chemical Research, 2019 - ACS Publications
Conspectus The ultimate limit of analytical chemistry is single-molecule detection, which
allows one to visualize the dynamic processes of chemical/biological interactions with single …

DNA probes for monitoring dynamic and transient molecular encounters on live cell membranes

M You, Y Lyu, D Han, L Qiu, Q Liu, T Chen… - Nature …, 2017 - nature.com
Cells interact with the extracellular environment through molecules expressed on the
membrane. Disruption of these membrane-bound interactions (or encounters) can result in …

DNA probes that store mechanical information reveal transient piconewton forces applied by T cells

R Ma, AV Kellner, VPY Ma, H Su… - Proceedings of the …, 2019 - National Acad Sciences
The advent of molecular tension probes for real-time mapping of piconewton forces in living
systems has had a major impact on mechanobiology. For example, DNA-based tension …

[HTML][HTML] Folding and unfolding pathways of the human telomeric G-quadruplex

RD Gray, JO Trent, JB Chaires - Journal of molecular biology, 2014 - Elsevier
Sequence analogs of human telomeric DNA such as d [AGGG (TTAGGG) 3](Tel22) fold into
monomeric quadruplex structures in the presence of a suitable cation. To investigate the …

A Light‐Triggered Synthetic Nanopore for Controlling Molecular Transport Across Biological Membranes

D Offenbartl‐Stiegert, A Rottensteiner… - Angewandte …, 2022 - Wiley Online Library
Controlling biological molecular processes with light is of interest in biological research and
biomedicine, as light allows precise and selective activation in a non‐invasive and non‐toxic …

Single-molecule fluorescence imaging in living cells

T Xia, N Li, X Fang - Annual review of physical chemistry, 2013 - annualreviews.org
The transition of single-molecule fluorescence detection and imaging from in vitro to living
cells has greatly enriched our knowledge on the behavior of single biomolecules in their …

Supramolecular hydrogels: Mechanical strengthening with dynamics

Y Li, C Zhu, Y Dong, D Liu - Polymer, 2020 - Elsevier
Supramolecular hydrogels display unique dynamic features such as self-healing and
injectability which are endowed by their non-covalent crosslinking. These extraordinary …

“Shutter” effects enhance protein diffusion in dynamic and rigid molecular networks

X Dai, Z Zhu, Y Li, B Yang, JF Xu, Y Dong… - Journal of the …, 2022 - ACS Publications
Hydrogels have been widely applied to understand the fundamental functions and
mechanism of a natural extracellular matrix (ECM). However, revealing the high permeability …

Determining sequence-dependent DNA oligonucleotide hybridization and dehybridization mechanisms using coarse-grained molecular simulation, markov state …

MS Jones, B Ashwood, A Tokmakoff… - Journal of the …, 2021 - ACS Publications
A robust understanding of the sequence-dependent thermodynamics of DNA hybridization
has enabled rapid advances in DNA nanotechnology. A fundamental understanding of the …