Plant pan-genomics and its applications
J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …
not shared among individuals. The variable DNA sequences, along with the conserved core …
From single-to multi-omics: future research trends in medicinal plants
L Yang, Y Yang, L Huang, X Cui… - Briefings in bioinformatics, 2023 - academic.oup.com
Medicinal plants are the main source of natural metabolites with specialised
pharmacological activities and have been widely examined by plant researchers. Numerous …
pharmacological activities and have been widely examined by plant researchers. Numerous …
Biotechnological advances to improve abiotic stress tolerance in crops
MA Villalobos-López, A Arroyo-Becerra… - International Journal of …, 2022 - mdpi.com
The major challenges that agriculture is facing in the twenty-first century are increasing
droughts, water scarcity, flooding, poorer soils, and extreme temperatures due to climate …
droughts, water scarcity, flooding, poorer soils, and extreme temperatures due to climate …
Exploring pan-genomes: an overview of resources and tools for unraveling structure, function, and evolution of crop genes and genomes
The availability of multiple sequenced genomes from a single species made it possible to
explore intra-and inter-specific genomic comparisons at higher resolution and build clade …
explore intra-and inter-specific genomic comparisons at higher resolution and build clade …
The genomic route to tomato breeding: past, present, and future
Y Wang, C Sun, Z Ye, C Li, S Huang, T Lin - Plant Physiology, 2024 - academic.oup.com
Abstract Over the past 10,000 years, tomato species have undergone both unintentional and
intentional selection to enhance their favorable traits for human consumption and …
intentional selection to enhance their favorable traits for human consumption and …
GWAS supported by computer vision identifies large numbers of candidate regulators of in planta regeneration in Populus trichocarpa
MF Nagle, J Yuan, D Kaur, C Ma… - G3: Genes …, 2024 - academic.oup.com
Plant regeneration is an important dimension of plant propagation and a key step in the
production of transgenic plants. However, regeneration capacity varies widely among …
production of transgenic plants. However, regeneration capacity varies widely among …
Legume pangenome: status and scope for crop improvement
In the last decade, legume genomics research has seen a paradigm shift due to advances in
genome sequencing technologies, assembly algorithms, and computational genomics that …
genome sequencing technologies, assembly algorithms, and computational genomics that …
Genomic decoding of Theobroma grandiflorum (cupuassu) at chromosomal scale: evolutionary insights for horticultural innovation
RM Alves, VAC de Abreu, RP Oliveira… - …, 2024 - academic.oup.com
Abstract Background Theobroma grandiflorum (Malvaceae), known as cupuassu, is a tree
indigenous to the Amazon basin, valued for its large fruits and seed pulp, contributing …
indigenous to the Amazon basin, valued for its large fruits and seed pulp, contributing …
k-mer-Based Genome-Wide Association Studies in Plants: Advances, Challenges, and Perspectives
Genome-wide association studies (GWAS) have allowed the discovery of marker–trait
associations in crops over recent decades. However, their power is hampered by a number …
associations in crops over recent decades. However, their power is hampered by a number …
Differences in activity and stability drive transposable element variation in tropical and temperate maize
Much of the profound interspecific variation in genome content has been attributed to
transposable elements (TEs). To explore the extent of TE variation within species, we …
transposable elements (TEs). To explore the extent of TE variation within species, we …