Genomics and bioinformatics applications in crop stress: Unraveling molecular mechanisms for sustainable agriculture
Understanding the link between crops and environmental stress is critical for creating
resilient, high-yielding types. Genomic techniques provide a comprehensive understanding …
resilient, high-yielding types. Genomic techniques provide a comprehensive understanding …
[HTML][HTML] Plant pangenomics, current practice and future direction
A pangenome encompasses the complete genetic diversity of a species, by assembling a
range of representative individuals from various populations. This review describes the …
range of representative individuals from various populations. This review describes the …
Deprivation of Sexual Reproduction during Garlic Domestication and Crop Evolution
E Shemesh-Mayer, A Faigenboim, A Sherman… - International Journal of …, 2023 - mdpi.com
Garlic, originating in the mountains of Central Asia, has undergone domestication and
subsequent widespread introduction to diverse regions. Human selection for adaptation to …
subsequent widespread introduction to diverse regions. Human selection for adaptation to …
PPanG: a precision pangenome browser enabling nucleotide-level analysis of genomic variations in individual genomes and their graph-based pangenome
M Liu, F Zhang, H Lu, H Xue, X Dong, Z Li, J Xu… - BMC genomics, 2024 - Springer
Graph-based pangenome is gaining more popularity than linear pangenome because it
stores more comprehensive information of variations. However, traditional linear genome …
stores more comprehensive information of variations. However, traditional linear genome …
Engineering the future cereal crops with big biological data: towards an intelligence-driven breeding by design
L Liu, J Zhan, J Yan - Journal of Genetics and Genomics, 2024 - Elsevier
How to feed 10 billion human populations is one of the challenges that need to be
addressed in the following decades, especially under an unpredicted climate change. Crop …
addressed in the following decades, especially under an unpredicted climate change. Crop …
Selection of Flax Genotypes for Pan-Genomic Studies by Sequencing Tagmentation-Based Transcriptome Libraries
EN Pushkova, EV Borkhert, RO Novakovskiy… - Plants, 2023 - mdpi.com
Flax (Linum usitatissimum L.) products are used in the food, pharmaceutical, textile, polymer,
medical, and other industries. The creation of a pan-genome will be an important advance in …
medical, and other industries. The creation of a pan-genome will be an important advance in …
Plant genome information facilitates plant functional genomics
JJ Bernal-Gallardo, S de Folter - Planta, 2024 - Springer
Main conclusion In this review, we give an overview of plant sequencing efforts and how this
impacts plant functional genomics research. Abstract Plant genome sequence information …
impacts plant functional genomics research. Abstract Plant genome sequence information …
Graph pangenomes track genetic variants for crop improvement
A Hameed, P Poznanski, A Nadolska-Orczyk… - International Journal of …, 2022 - mdpi.com
Global climate change and the urgency to transform crops require an exhaustive genetic
evaluation. The large polyploid genomes of food crops, such as cereals, make it difficult to …
evaluation. The large polyploid genomes of food crops, such as cereals, make it difficult to …
RepeatOBserver: tandem repeat visualization and centromere detection
Tandem repeats can play an important role in centromere structure, subtelomeric regions,
DNA methylation, recombination, and the regulation of gene activity. There is a growing …
DNA methylation, recombination, and the regulation of gene activity. There is a growing …
In silico prediction of microRNA families involved in the biosynthesis of lignans and cyanogenic glycosides in flax (Linum usitatissimumL.)
Ľ Harenčár, K Ražná - Plant Growth Regulation, 2024 - Springer
Flaxseed (Linum usitatissimum L.) is renowned for having the highest concentration of
lignans among all plant species worldwide. However, it also contains a notable amount of …
lignans among all plant species worldwide. However, it also contains a notable amount of …