In silico methods and tools for drug discovery

B Shaker, S Ahmad, J Lee, C Jung, D Na - Computers in biology and …, 2021 - Elsevier
In the past, conventional drug discovery strategies have been successfully employed to
develop new drugs, but the process from lead identification to clinical trials takes more than …

[HTML][HTML] Machine learning in chemoinformatics and drug discovery

YC Lo, SE Rensi, W Torng, RB Altman - Drug discovery today, 2018 - Elsevier
Highlights•Chemical graph theory and descriptors in drug discovery.•Chemical fingerprint
and similarity analysis.•Machine learning models for virtual screening.•Future challenges …

Computational/in silico methods in drug target and lead prediction

FE Agamah, GK Mazandu, R Hassan… - Briefings in …, 2020 - academic.oup.com
Drug-like compounds are most of the time denied approval and use owing to the
unexpected clinical side effects and cross-reactivity observed during clinical trials. These …

Integration of virtual and high-throughput screening

J Bajorath - Nature Reviews Drug Discovery, 2002 - nature.com
High-throughput and virtual screening are important components of modern drug discovery
research. Typically, these screening technologies are considered distinct approaches, as …

[图书][B] An introduction to chemoinformatics

AR Leach, VJ Gillet - 2007 - books.google.com
Chemoinformatics draws upon techniques from many disciplines including computer
science, mathematics, computational chemistry and data visualisation to tackle these …

Graph kernels for chemical informatics

L Ralaivola, SJ Swamidass, H Saigo, P Baldi - Neural networks, 2005 - Elsevier
Increased availability of large repositories of chemical compounds is creating new
challenges and opportunities for the application of machine learning methods to problems in …

Maximum common subgraph isomorphism algorithms for the matching of chemical structures

JW Raymond, P Willett - Journal of computer-aided molecular design, 2002 - Springer
The maximum common subgraph (MCS) problem has become increasingly important in
those aspects of chemoinformatics that involve the matching of 2D or 3D chemical …

Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures

J Hert, P Willett, DJ Wilton, P Acklin… - Journal of chemical …, 2004 - ACS Publications
Fingerprint-based similarity searching is widely used for virtual screening when only a single
bioactive reference structure is available. This paper reviews three distinct ways of carrying …

[HTML][HTML] Lazar: a modular predictive toxicology framework

A Maunz, M Gütlein, M Rautenberg… - Frontiers in …, 2013 - frontiersin.org
lazar (lazy structure–activity relationships) is a modular framework for predictive toxicology.
Similar to the read across procedure in toxicological risk assessment, lazar creates local …

A binary linear programming formulation of the graph edit distance

D Justice, A Hero - IEEE Transactions on Pattern Analysis and …, 2006 - ieeexplore.ieee.org
A binary linear programming formulation of the graph edit distance for unweighted,
undirected graphs with vertex attributes is derived and applied to a graph recognition …