[PDF][PDF] Single‐cell, single‐nucleus, and spatial RNA sequencing of the human liver identifies cholangiocyte and mesenchymal heterogeneity

TS Andrews, J Atif, JC Liu, CT Perciani… - Hepatology …, 2022 - Wiley Online Library
The critical functions of the human liver are coordinated through the interactions of hepatic
parenchymal and non‐parenchymal cells. Recent advances in single‐cell transcriptional …

[PDF][PDF] Comprehensive integration of single-cell data

T Stuart, A Butler, P Hoffman, C Hafemeister… - cell, 2019 - cell.com
Single-cell transcriptomics has transformed our ability to characterize cell states, but deep
biological understanding requires more than a taxonomic listing of clusters. As new methods …

[HTML][HTML] Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris: The Tabula Muris Consortium

N Schaum, J Karkanias, NF Neff, AP May, SR Quake… - Nature, 2018 - ncbi.nlm.nih.gov
We have created a compendium of single cell transcriptomic data from the model organism
Mus musculus comprising more than 100,000 cells from 20 organs and tissues. These data …

[HTML][HTML] A subset of Kupffer cells regulates metabolism through the expression of CD36

C Blériot, E Barreby, G Dunsmore, R Ballaire… - Immunity, 2021 - cell.com
Tissue macrophages are immune cells whose phenotypes and functions are dictated by
origin and niches. However, tissues are complex environments, and macrophage …

Liver homeostasis is maintained by midlobular zone 2 hepatocytes

Y Wei, YG Wang, Y Jia, L Li, J Yoon, S Zhang, Z Wang… - Science, 2021 - science.org
INTRODUCTION The liver's remarkable capacity to maintain proper tissue mass after injury
has been known since ancient times. However, there has been considerable debate about …

A molecular atlas of cell types and zonation in the brain vasculature

M Vanlandewijck, L He, MA Mäe, J Andrae, K Ando… - Nature, 2018 - nature.com
Cerebrovascular disease is the third most common cause of death in developed countries,
but our understanding of the cells that compose the cerebral vasculature is limited. Here …

[HTML][HTML] High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE

MR Vahid, EL Brown, CB Steen, W Zhang… - Nature …, 2023 - nature.com
Recent studies have emphasized the importance of single-cell spatial biology, yet available
assays for spatial transcriptomics have limited gene recovery or low spatial resolution. Here …

[HTML][HTML] Inferring spatial and signaling relationships between cells from single cell transcriptomic data

Z Cang, Q Nie - Nature communications, 2020 - nature.com
Single-cell RNA sequencing (scRNA-seq) provides details for individual cells; however,
crucial spatial information is often lost. We present SpaOTsc, a method relying on structured …

[HTML][HTML] Identification, discrimination and heterogeneity of fibroblasts

U Lendahl, L Muhl, C Betsholtz - Nature communications, 2022 - nature.com
Fibroblasts, the principal cell type of connective tissue, secrete extracellular matrix
components during tissue development, homeostasis, repair and disease. Despite this …

XCR1+ type 1 conventional dendritic cells drive liver pathology in non-alcoholic steatohepatitis

A Deczkowska, E David, P Ramadori, D Pfister… - Nature medicine, 2021 - nature.com
Non-alcoholic fatty liver disease (NAFLD) and non-alcoholic steatohepatitis (NASH) are
prevalent liver conditions that underlie the development of life-threatening cirrhosis, liver …