[PDF][PDF] Single‐cell, single‐nucleus, and spatial RNA sequencing of the human liver identifies cholangiocyte and mesenchymal heterogeneity
The critical functions of the human liver are coordinated through the interactions of hepatic
parenchymal and non‐parenchymal cells. Recent advances in single‐cell transcriptional …
parenchymal and non‐parenchymal cells. Recent advances in single‐cell transcriptional …
[PDF][PDF] Comprehensive integration of single-cell data
Single-cell transcriptomics has transformed our ability to characterize cell states, but deep
biological understanding requires more than a taxonomic listing of clusters. As new methods …
biological understanding requires more than a taxonomic listing of clusters. As new methods …
[HTML][HTML] Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris: The Tabula Muris Consortium
We have created a compendium of single cell transcriptomic data from the model organism
Mus musculus comprising more than 100,000 cells from 20 organs and tissues. These data …
Mus musculus comprising more than 100,000 cells from 20 organs and tissues. These data …
[HTML][HTML] A subset of Kupffer cells regulates metabolism through the expression of CD36
C Blériot, E Barreby, G Dunsmore, R Ballaire… - Immunity, 2021 - cell.com
Tissue macrophages are immune cells whose phenotypes and functions are dictated by
origin and niches. However, tissues are complex environments, and macrophage …
origin and niches. However, tissues are complex environments, and macrophage …
Liver homeostasis is maintained by midlobular zone 2 hepatocytes
INTRODUCTION The liver's remarkable capacity to maintain proper tissue mass after injury
has been known since ancient times. However, there has been considerable debate about …
has been known since ancient times. However, there has been considerable debate about …
A molecular atlas of cell types and zonation in the brain vasculature
M Vanlandewijck, L He, MA Mäe, J Andrae, K Ando… - Nature, 2018 - nature.com
Cerebrovascular disease is the third most common cause of death in developed countries,
but our understanding of the cells that compose the cerebral vasculature is limited. Here …
but our understanding of the cells that compose the cerebral vasculature is limited. Here …
[HTML][HTML] High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE
Recent studies have emphasized the importance of single-cell spatial biology, yet available
assays for spatial transcriptomics have limited gene recovery or low spatial resolution. Here …
assays for spatial transcriptomics have limited gene recovery or low spatial resolution. Here …
[HTML][HTML] Inferring spatial and signaling relationships between cells from single cell transcriptomic data
Single-cell RNA sequencing (scRNA-seq) provides details for individual cells; however,
crucial spatial information is often lost. We present SpaOTsc, a method relying on structured …
crucial spatial information is often lost. We present SpaOTsc, a method relying on structured …
[HTML][HTML] Identification, discrimination and heterogeneity of fibroblasts
U Lendahl, L Muhl, C Betsholtz - Nature communications, 2022 - nature.com
Fibroblasts, the principal cell type of connective tissue, secrete extracellular matrix
components during tissue development, homeostasis, repair and disease. Despite this …
components during tissue development, homeostasis, repair and disease. Despite this …
XCR1+ type 1 conventional dendritic cells drive liver pathology in non-alcoholic steatohepatitis
A Deczkowska, E David, P Ramadori, D Pfister… - Nature medicine, 2021 - nature.com
Non-alcoholic fatty liver disease (NAFLD) and non-alcoholic steatohepatitis (NASH) are
prevalent liver conditions that underlie the development of life-threatening cirrhosis, liver …
prevalent liver conditions that underlie the development of life-threatening cirrhosis, liver …