Recent advances and future perspectives in cotton research

G Huang, JQ Huang, XY Chen… - Annual review of plant …, 2021 - annualreviews.org
Cotton is not only the world's most important natural fiber crop, but it is also an ideal system
in which to study genome evolution, polyploidization, and cell elongation. With the assembly …

A comprehensive overview of cotton genomics, biotechnology and molecular biological studies

X Wen, Z Chen, Z Yang, M Wang, S Jin, G Wang… - Science China Life …, 2023 - Springer
Cotton is an irreplaceable economic crop currently domesticated in the human world for its
extremely elongated fiber cells specialized in seed epidermis, which makes it of high …

Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium

M Wang, J Li, Z Qi, Y Long, L Pei, X Huang… - Nature Genetics, 2022 - nature.com
Phenotypic diversity and evolutionary innovation ultimately trace to variation in genomic
sequence and rewiring of regulatory networks. Here, we constructed a pan-genome of the …

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

R Peng, Y Xu, S Tian, T Unver, Z Liu… - Proceedings of the …, 2022 - National Acad Sciences
Allotetraploid cotton (Gossypium) species represents a model system for the study of plant
polyploidy, molecular evolution, and domestication. Here, chromosome-scale genome …

CottonGen: the community database for cotton genomics, genetics, and breeding research

J Yu, S Jung, CH Cheng, T Lee, P Zheng, K Buble… - Plants, 2021 - mdpi.com
Over the last eight years, the volume of whole genome, gene expression, SNP genotyping,
and phenotype data generated by the cotton research community has exponentially …

CottonMD: a multi-omics database for cotton biological study

Z Yang, J Wang, Y Huang, S Wang, L Wei… - Nucleic Acids …, 2023 - academic.oup.com
Cotton is an important economic crop, and many loci for important traits have been
identified, but it remains challenging and time-consuming to identify candidate or causal …

Recent progression and future perspectives in cotton genomic breeding

Z Yang, C Gao, Y Zhang, Q Yan, W Hu… - Journal of Integrative …, 2023 - Wiley Online Library
Upland cotton is an important global cash crop for its long seed fibers and high edible oil
and protein content. Progress in cotton genomics promotes the advancement of cotton …

Two long read-based genome assembly and annotation of polyploidy woody plants, Hibiscus syriacus L. using PacBio and Nanopore platforms

H Koo, GW Lee, SR Ko, S Go, SY Kwon, YM Kim… - Scientific Data, 2023 - nature.com
Improvements in long read DNA sequencing and related techniques facilitated the
generation of complex eukaryotic genomes. Despite these advances, the quality of …

Genomic and GWAS analyses demonstrate phylogenomic relationships of Gossypium barbadense in China and selection for fibre length, lint percentage and …

N Zhao, W Wang, CE Grover, K Jiang… - Plant Biotechnology …, 2022 - Wiley Online Library
Summary Sea Island cotton (Gossypium barbadense) is the source of the world's finest fibre
quality cotton, yet relatively little is understood about genetic variations among diverse …

Genome-wide chromatin accessibility analysis unveils open chromatin convergent evolution during polyploidization in cotton

J Han, D Lopez-Arredondo, G Yu… - Proceedings of the …, 2022 - National Acad Sciences
Allopolyploidization, resulting in divergent genomes in the same cell, is believed to trigger a
“genome shock”, leading to broad genetic and epigenetic changes. However, little is …