MSDB: a comprehensive, annotated database of microsatellites

AK Avvaru, D Sharma, A Verma, RK Mishra… - Nucleic acids …, 2020 - academic.oup.com
Microsatellites are short tandem repeats of 1–6 nucleotide motifs, studied for their utility as
genome markers and in forensics. Recent evidence points to the role of microsatellites in …

ranchSATdb: A Genome-Wide Simple Sequence Repeat (SSR) Markers Database of Livestock Species for Mutant Germplasm Characterization and Improving Farm …

N Duhan, S Kaur, R Kaundal - Genes, 2023 - mdpi.com
Microsatellites, also known as simple sequence repeats (SSRs), are polymorphic loci that
play an important role in genome research, animal breeding, and disease control. Ranch …

Comparison of the microsatellite distribution patterns in the genomes of euarchontoglires at the taxonomic level

X Song, T Yang, X Zhang, Y Yuan, X Yan, Y Wei… - Frontiers in …, 2021 - frontiersin.org
Microsatellite or simple sequence repeat (SSR) instability within genes can induce genetic
variation. The SSR signatures remain largely unknown in different clades within …

Development of a 17-plex of penta-and tetra-nucleotide microsatellites for DNA profiling and paternity testing in horses

AM Luttman, M Komine, T Thaiwong… - Frontiers in Veterinary …, 2022 - frontiersin.org
Tetranucleotide and pentanucleotide short tandem repeat (hereafter termed tetraSTR and
pentaSTR) polymorphisms have properties that make them desirable for DNA profiling and …

Global abundance of short tandem repeats is non-random in rodents and primates

M Arabfard, M Salesi, YH Nourian, I Arabipour… - BMC Genomic …, 2022 - Springer
Background While of predominant abundance across vertebrate genomes and significant
biological implications, the relevance of short tandem repeats (STRs)(also known as …

Microsatellite genotyping of two Bulgarian sheep breeds

T Odjakova, P Todorov, G Radoslavov, P Hristov - Diversity, 2022 - mdpi.com
The aim of this study was to compare the genetic structure and genetic diversity of two
Bulgarian sheep breeds. A total of 41 individuals from a modern Bulgarian sheep population …

Genome skimming-based simple sequence repeat (SSR) marker discovery and characterization in Grevillea robusta

A Dabral, A Shamoon, RK Meena, R Kant… - … and Molecular Biology …, 2021 - Springer
Proteaceae, a largely southern hemisphere family consisting of 80 genera distributed in
Australia and southern Africa as its centres of greatest diversity, also extends well in …

Genome survey sequencing and characterization of simple sequence repeat (SSR) markers in Platostoma palustre (Blume) AJPaton (Chinese mesona)

Z Zheng, N Zhang, Z Huang, Q Zeng, Y Huang, Y Qi - Scientific Reports, 2022 - nature.com
Abstract Platostoma palustre (Blume) AJ Paton is an annual herbaceous persistent plant of
the Labiatae family. However, there is a lack of genomic data for this plant, which severely …

An empirical analysis of mtSSRs: could microsatellite distribution patterns explain the evolution of mitogenomes in plants?

KEJ de Freitas, C Busanello, VE Viana… - Functional & Integrative …, 2022 - Springer
Microsatellites (SSRs) are tandem repeat sequences in eukaryote genomes, including plant
cytoplasmic genomes. The mitochondrial genome (mtDNA) has been shown to vary in size …

citSATdb: Genome-Wide Simple Sequence Repeat (SSR) Marker Database of Citrus Species for Germplasm Characterization and Crop Improvement

N Duhan, M Meshram, CD Loaiza, R Kaundal - Genes, 2020 - mdpi.com
Microsatellites or simple sequence repeats (SSRs) are popular co-dominant markers that
play an important role in crop improvement. To enhance genomic resources in general …