The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain

KM Harlen, LS Churchman - Nature reviews Molecular cell biology, 2017 - nature.com
The carboxy-terminal domain (CTD) extends from the largest subunit of RNA polymerase II
(Pol II) as a long, repetitive and largely unstructured polypeptide chain. Throughout the …

Splicing and transcription touch base: co-transcriptional spliceosome assembly and function

L Herzel, DSM Ottoz, T Alpert… - Nature reviews Molecular …, 2017 - nature.com
Several macromolecular machines collaborate to produce eukaryotic messenger RNA. RNA
polymerase II (Pol II) translocates along genes that are up to millions of base pairs in length …

Coupling mRNA processing with transcription in time and space

DL Bentley - Nature Reviews Genetics, 2014 - nature.com
Maturation of mRNA precursors often occurs simultaneously with their synthesis by RNA
polymerase II (Pol II). The co-transcriptional nature of mRNA processing has permitted the …

[HTML][HTML] Mechanism of alternative splicing and its regulation

Y Wang, J Liu, BO Huang, YM Xu, J Li… - Biomedical …, 2015 - spandidos-publications.com
Alternative splicing of precursor mRNA is an essential mechanism to increase the
complexity of gene expression, and it plays an important role in cellular differentiation and …

The integrator complex attenuates promoter-proximal transcription at protein-coding genes

ND Elrod, T Henriques, KL Huang, DC Tatomer… - Molecular cell, 2019 - cell.com
The transition of RNA polymerase II (Pol II) from initiation to productive elongation is a
central, regulated step in metazoan gene expression. At many genes, Pol II pauses stably in …

How phosphorylation impacts intrinsically disordered proteins and their function

EA Newcombe, E Delaforge… - Essays in …, 2022 - portlandpress.com
Phosphorylation is the most common post-translational modification (PTM) in eukaryotes,
occurring particularly frequently in intrinsically disordered proteins (IDPs). These proteins …

Transcription termination and the control of the transcriptome: why, where and how to stop

O Porrua, D Libri - Nature reviews Molecular cell biology, 2015 - nature.com
Transcription termination occurs when the polymerase is released after a transcription event,
thus delimitating transcription units; however, the functional importance of termination …

The RNA polymerase II carboxy-terminal domain (CTD) code

D Eick, M Geyer - Chemical reviews, 2013 - ACS Publications
The smallest viable unit of life is the cell. From bacteria to mammals, all cells use the same
nucleic acid-based universal code for the maintenance and inheritance of genetic …

The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes

D Blazek, J Kohoutek, K Bartholomeeusen… - Genes & …, 2011 - genesdev.cshlp.org
Various cyclin-dependent kinase (Cdk) complexes have been implicated in the regulation of
transcription. In this study, we identified a 70-kDa Cyclin K (CycK) that binds Cdk12 and …

The pol II CTD: new twists in the tail

J Zaborowska, S Egloff, S Murphy - Nature structural & molecular …, 2016 - nature.com
The C-terminal domain (CTD) of the large subunit of RNA polymerase (pol) II comprises
conserved heptad repeats, and post-translational modification of the CTD regulates …