Recent progression and future perspectives in cotton genomic breeding

Z Yang, C Gao, Y Zhang, Q Yan, W Hu… - Journal of Integrative …, 2023 - Wiley Online Library
Upland cotton is an important global cash crop for its long seed fibers and high edible oil
and protein content. Progress in cotton genomics promotes the advancement of cotton …

Genome-wide analysis of codon usage bias in four sequenced cotton species

L Wang, H Xing, Y Yuan, X Wang, M Saeed, J Tao… - PloS one, 2018 - journals.plos.org
Codon usage bias (CUB) is an important evolutionary feature in a genome which provides
important information for studying organism evolution, gene function and exogenous gene …

Genetic basis for glandular trichome formation in cotton

D Ma, Y Hu, C Yang, B Liu, L Fang, Q Wan… - Nature …, 2016 - nature.com
Trichomes originate from epidermal cells and can be classified as either glandular or non-
glandular. Gossypium species are characterized by the presence of small and darkly …

Optimization of CRISPR/Cas9 genome editing in cotton by improved sgRNA expression

L Long, DD Guo, W Gao, WW Yang, LP Hou, XN Ma… - Plant Methods, 2018 - Springer
Abstract Background When developing CRISPR/Cas9 systems for crops, it is crucial to
invest time characterizing the genome editing efficiency of the CRISPR/Cas9 cassettes …

Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress

F Deng, X Zhang, W Wang, R Yuan, F Shen - BMC plant biology, 2018 - Springer
Abstract Background Long non-coding RNAs (lncRNAs) represent a class of riboregulators
that either directly act in long form or are processed into shorter microRNAs (miRNAs) and …

Role of WRKY transcription factors in regulation of abiotic stress responses in cotton

X Guo, A Ullah, D Siuta, B Kukfisz, S Iqbal - Life, 2022 - mdpi.com
Environmental factors are the major constraints in sustainable agriculture. WRKY proteins
are a large family of transcription factors (TFs) that regulate various developmental …

GreeNC 2.0: a comprehensive database of plant long non-coding RNAs

M Di Marsico, A Paytuvi Gallart… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The Green Non-Coding Database (GreeNC) is one of the reference databases for
the study of plant long non-coding RNAs (lncRNAs). Here we present our most recent …

The chromosome-scale genome reveals the evolution and diversification after the recent tetraploidization event in tea plant

JD Chen, C Zheng, JQ Ma, CK Jiang… - Horticulture …, 2020 - academic.oup.com
Tea is one of the most popular nonalcoholic beverages due to its characteristic secondary
metabolites with numerous health benefits. Although two draft genomes of tea plant …

A cotton MYB transcription factor, GbMYB5, is positively involved in plant adaptive response to drought stress

T Chen, W Li, X Hu, J Guo, A Liu… - Plant and Cell …, 2015 - academic.oup.com
Drought stress negatively affects plant growth and limits plant productivity. Genes
functioning in plant responses to drought stress are essential for the development of drought …

miR482 Regulation of NBS-LRR Defense Genes during Fungal Pathogen Infection in Cotton

QH Zhu, L Fan, Y Liu, H Xu, D Llewellyn, I Wilson - PloS one, 2013 - journals.plos.org
In this study, we characterized the miR482 family in cotton using existing small RNA
datasets and the recently released draft genome sequence of Gossypium raimondii, a …