DNA bendability and nucleosome positioning in transcriptional regulation
The placement of nucleosomes along genomic DNA is determined by signals that can be
specific or degenerate at the level of sequence; the latter signals are harder to find using …
specific or degenerate at the level of sequence; the latter signals are harder to find using …
Functional analysis of the integration host factor site of the σ54Pu promoter of Pseudomonas putida by in vivo UV imprinting
M Valls, R Silva‐Rocha, I Cases, A Muñoz… - Molecular …, 2011 - Wiley Online Library
The integration host factor (IHF) of Pseudomonas putida connects cell growth to
transcriptional activity of distinct promoters. The IHF site of the σ54 promoter Pu of the TOL …
transcriptional activity of distinct promoters. The IHF site of the σ54 promoter Pu of the TOL …
Pressure dissociation of integration host factor–DNA complexes reveals flexibility-dependent structural variation at the protein–DNA interface
DF Senear, V Tretyachenko-Ladokhina… - Nucleic acids …, 2007 - academic.oup.com
E. coli Integration host factor (IHF) condenses the bacterial nucleoid by wrapping DNA.
Previously, we showed that DNA flexibility compensates for structural characteristics of the …
Previously, we showed that DNA flexibility compensates for structural characteristics of the …
Variation of the intercalating proline in artificial peptides mimicking the DNA binding and bending IHF protein
S Scholz, EK Liebler, B Eickmann, HJ Fritz… - Amino Acids, 2012 - Springer
The integration host factor (IHF) is a protein which sequence specifically induces a bend of
double-stranded DNA by more than 160°. Based on IHF as lead structure, a peptide mimic …
double-stranded DNA by more than 160°. Based on IHF as lead structure, a peptide mimic …
Modulating Fis and IHF binding specificity, crosstalk and regulatory logic through the engineering of complex promoters
LMO Monteiro, A Sanches-Medeiros, CA Westmann… - bioRxiv, 2019 - biorxiv.org
Bacterial promoters are usually formed by multiple cis-regulatory elements recognized by a
plethora of transcriptional factors (TFs). From those, global regulators are key elements …
plethora of transcriptional factors (TFs). From those, global regulators are key elements …
Phylogénie et évolution des génomes procaryotes
V Daubin - 2002 - theses.hal.science
Longtemps considéré comme une structure stable hautement optimisée, le génome des
procaryotes nous apparaît, au regard de récentes découvertes, comme extrêmement …
procaryotes nous apparaît, au regard de récentes découvertes, comme extrêmement …
Probing Nucleoid Structure in Bacteria Using Phage Lambda Integrase‐Mediated Chromosome Rearrangements
N Garcia‐Russell, SS Orchard, AM Segall - Methods in enzymology, 2007 - Elsevier
Conservative site‐specific recombination has been adapted for a multitude of uses, in both
prokaryotes and eukaryotes, including genetic engineering, expression technologies, and …
prokaryotes and eukaryotes, including genetic engineering, expression technologies, and …
Extreme DNA bending: molecular basis of the regulatory breadth of IHF
A Muñoz, M Valls, V de Lorenzo - Bacterial Chromatin, 2010 - Springer
The Integration host factor (IHF) is a heterodimeric, sequence-specific DNA-binding and
DNA-bending protein found in many types of eubacteria. The sole function of IHF is to bring …
DNA-bending protein found in many types of eubacteria. The sole function of IHF is to bring …
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DF Senear, V Tretyachenko-Ladokhina, ML Opel… - scholarworks.umt.edu
ABSTRACT E. coli Integration host factor (IHF) condenses the bacterial nucleoid by
wrapping DNA. Previously, we showed that DNA flexibility compensates for structural …
wrapping DNA. Previously, we showed that DNA flexibility compensates for structural …
FIS and nucleoid dynamics upon exit from lag phase
G Muskhelishvili, A Travers - Bacterial chromatin, 2010 - Springer
FIS is perhaps one of the most spectacular members of the small class of bacterial nucleoid-
associated proteins. The transient pattern of FIS expression is unique and for no other …
associated proteins. The transient pattern of FIS expression is unique and for no other …