List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ

AC Parte, J Sardà Carbasse… - … of systematic and …, 2020 - microbiologyresearch.org
The List of Prokaryotic names with Standing in Nomenclature (LPSN) was acquired in
November 2019 by the DSMZ and was relaunched using an entirely new production system …

Prokaryotic taxonomy and nomenclature in the age of big sequence data

P Hugenholtz, M Chuvochina, A Oren… - the ISME …, 2021 - academic.oup.com
The classification of life forms into a hierarchical system (taxonomy) and the application of
names to this hierarchy (nomenclature) is at a turning point in microbiology. The …

TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes

JP Meier-Kolthoff, JS Carbasse… - Nucleic acids …, 2022 - academic.oup.com
Microbial systematics is heavily influenced by genome-based methods and challenged by
an ever increasing number of taxon names and associated sequences in public data …

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

A Hördt, MG López, JP Meier-Kolthoff… - Frontiers in …, 2020 - frontiersin.org
The class Alphaproteobacteria is comprised of a diverse assemblage of Gram-negative
bacteria that includes organisms of varying morphologies, physiologies and habitat …

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

M García-López, JP Meier-Kolthoff, BJ Tindall… - Frontiers in …, 2019 - frontiersin.org
Although considerable progress has been made in recent years regarding the classification
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …

Genomics in Bacterial Taxonomy: Impact on the Genus Pseudomonas

J Lalucat, M Mulet, M Gomila, E García-Valdés - Genes, 2020 - mdpi.com
The introduction of genomics is profoundly changing current bacterial taxonomy.
Phylogenomics provides accurate methods for delineating species and allows us to infer the …

Biocontrol ability and action mechanism of Bacillus halotolerans against Botrytis cinerea causing grey mould in postharvest strawberry fruit

F Wang, J Xiao, Y Zhang, R Li, L Liu, J Deng - Postharvest Biology and …, 2021 - Elsevier
Bacillus species are promising agent for the biological control of postharvest diseases. This
study investigated the bio-control efficiency of Bacillus halotolerans KLBC XJ-5 against grey …

Automated analysis of genomic sequences facilitates high-throughput and comprehensive description of bacteria

TCA Hitch, T Riedel, A Oren, J Overmann… - ISME …, 2021 - academic.oup.com
The study of microbial communities is hampered by the large fraction of still unknown
bacteria. However, many of these species have been isolated, yet lack a validly published …

Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

R Riesco, ME Trujillo - International Journal of Systematic …, 2024 - microbiologyresearch.org
The field of microbial taxonomy is dynamic, aiming to provide a stable and contemporary
classification system for prokaryotes. Traditionally, reliance on phenotypic characteristics …

Streptomyces polyketides mediate bacteria–fungi interactions across soil environments

MKC Krespach, MC Stroe, T Netzker, M Rosin… - Nature …, 2023 - nature.com
Although the interaction between prokaryotic and eukaryotic microorganisms is crucial for
the functioning of ecosystems, information about the processes driving microbial interactions …