RNA-mediated epigenetic regulation of gene expression

D Holoch, D Moazed - Nature Reviews Genetics, 2015 - nature.com
Diverse classes of RNA, ranging from small to long non-coding RNAs, have emerged as key
regulators of gene expression, genome stability and defence against foreign genetic …

Role of H3K9me3 heterochromatin in cell identity establishment and maintenance

D Nicetto, KS Zaret - Current opinion in genetics & development, 2019 - Elsevier
Compacted, transcriptionally repressed chromatin, referred to as heterochromatin,
represents a major fraction of the higher eukaryotic genome and exerts pivotal functions of …

Codon usage is an important determinant of gene expression levels largely through its effects on transcription

Z Zhou, Y Dang, M Zhou, L Li, C Yu… - Proceedings of the …, 2016 - National Acad Sciences
Codon usage biases are found in all eukaryotic and prokaryotic genomes, and preferred
codons are more frequently used in highly expressed genes. The effects of codon usage on …

DNA methylation and gene function

A Razin, AD Riggs - Science, 1980 - science.org
In most higher organisms, DNA is modified after synthesis by the enzymatic conversion of
many cytosine residues to 5-methylcytosine. For several years, control of gene activity by …

Synergy of demethylation and histone deacetylase inhibition in the re-expression of genes silenced in cancer

EE Cameron, KE Bachman, S Myöhänen, JG Herman… - Nature …, 1999 - nature.com
Densely methylated DNA associates with transcriptionally repressive chromatin
characterized by the presence of underacetylated histones 1, 2. Recently, these two …

Cell fusion is the principal source of bone-marrow-derived hepatocytes

X Wang, H Willenbring, Y Akkari, Y Torimaru, M Foster… - nature, 2003 - nature.com
Evidence suggests that haematopoietic stem cells might have unexpected developmental
plasticity, highlighting therapeutic potential. For example, bone-marrow-derived hepatocytes …

DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci

MR Rountree, KE Bachman, SB Baylin - Nature genetics, 2000 - nature.com
DNA methylation can contribute to transcriptional silencing through several transcriptionally
repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and …

DNA methyltransferase Dnmt1 associates with histone deacetylase activity

F Fuks, WA Burgers, A Brehm, L Hughes-Davies… - Nature …, 2000 - nature.com
The DNA methyltransferase Dnmt1 is responsible for cytosine methylation in mammals and
has a role in gene silencing 1, 2, 3, 4. DNA methylation represses genes partly by …

A histone H3 methyltransferase controls DNA methylation in Neurospora crassa

H Tamaru, EU Selker - Nature, 2001 - nature.com
DNA methylation is involved in epigenetic processes such as X-chromosome inactivation,
imprinting and silencing of transposons. We have demonstrated previously that dim-2 …

[HTML][HTML] Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects

EJ Richards, SCR Elgin - Cell, 2002 - cell.com
Recent results from diverse organisms point to a self-reinforcing network of interactions
among the three best-characterized covalent modifications that mark heterochromatin …