[HTML][HTML] The Allen mouse brain common coordinate framework: a 3D reference atlas

Q Wang, SL Ding, Y Li, J Royall, D Feng, P Lesnar… - Cell, 2020 - cell.com
Recent large-scale collaborations are generating major surveys of cell types and
connections in the mouse brain, collecting large amounts of data across modalities, spatial …

Whole-brain functional ultrasound imaging in awake head-fixed mice

C Brunner, M Grillet, A Urban, B Roska, G Montaldo… - Nature …, 2021 - nature.com
Most brain functions engage a network of distributed regions. Full investigation of these
functions thus requires assessment of whole brains; however, whole-brain functional …

[HTML][HTML] Network analysis of neuroimaging in mice

L Scharwächter, FJ Schmitt, N Pallast, GR Fink… - Neuroimage, 2022 - Elsevier
Graph theory allows assessing changes of neuronal connectivity and interactions of brain
regions in response to local lesions, eg, after stroke, and global perturbations, eg, due to …

Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging

AI Renton, TT Dao, T Johnstone, O Civier… - Nature …, 2024 - nature.com
Neuroimaging research requires purpose-built analysis software, which is challenging to
install and may produce different results across computing environments. The community …

[HTML][HTML] Enhanced and unified anatomical labeling for a common mouse brain atlas

U Chon, DJ Vanselow, KC Cheng, Y Kim - Nature communications, 2019 - nature.com
Anatomical atlases in standard coordinates are necessary for the interpretation and
integration of research findings in a common spatial context. However, the two most-used …

[HTML][HTML] DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas

H Carey, M Pegios, L Martin, C Saleeba… - Nature …, 2023 - nature.com
Registration of data to a common frame of reference is an essential step in the analysis and
integration of diverse neuroscientific data. To this end, volumetric brain atlases enable …

[HTML][HTML] Reactive astrocytes prevent maladaptive plasticity after ischemic stroke

M Aswendt, U Wilhelmsson, F Wieters… - Progress in …, 2022 - Elsevier
Restoration of functional connectivity is a major contributor to functional recovery after
stroke. We investigated the role of reactive astrocytes in functional connectivity and recovery …

Translating functional connectivity after stroke: functional magnetic resonance imaging detects comparable network changes in mice and humans

SJ Blaschke, L Hensel, A Minassian, S Vlachakis… - Stroke, 2021 - Am Heart Assoc
Background and Purpose: The translational roadblock has long impeded the
implementation of experimental therapeutic approaches for stroke into clinical routine …

Imaging the human brain on oral contraceptives: A review of structural imaging methods and implications for future research goals

C Heller, ACS Kimmig, MR Kubicki, B Derntl… - Frontiers in …, 2022 - Elsevier
Worldwide over 150 million women use oral contraceptives (OCs), which are the most
prescribed form of contraception in both the United States and in European countries. Sex …

[HTML][HTML] Microcephaly with a disproportionate hippocampal reduction, stem cell loss and neuronal lipid droplet symptoms in Trappc9 KO mice

S Aljuraysi, M Platt, M Pulix, H Poptani… - Neurobiology of Disease, 2024 - Elsevier
Mutations of the human TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9
(TRAPPC9) cause a neurodevelopmental disorder characterised by microcephaly and …