Genome organization and botanical diversity

AH Paterson, C Queitsch - The Plant Cell, 2024 - academic.oup.com
The rich diversity of angiosperms, both the planet's dominant flora and the cornerstone of
agriculture, is integrally intertwined with a distinctive evolutionary history. Here, we explore …

Extreme restructuring of cis-regulatory regions controlling a deeply conserved plant stem cell regulator

D Ciren, S Zebell, ZB Lippman - PLoS Genetics, 2024 - journals.plos.org
A striking paradox is that genes with conserved protein sequence, function and expression
pattern over deep time often exhibit extremely divergent cis-regulatory sequences. It remains …

Plant enhancers exhibit both cooperative and additive interactions among their functional elements

T Jores, J Tonnies, NA Mueth, A Romanowski… - The Plant …, 2024 - academic.oup.com
Enhancers are cis-regulatory elements that shape gene expression in response to
numerous developmental and environmental cues. In animals, several models have been …

[HTML][HTML] Arabidopsis and maize terminator strength is determined by gc content, polyadenylation motifs and cleavage probability

S Gorjifard, T Jores, J Tonnies, NA Mueth, K Bubb… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The 3'end of a gene, often called a terminator, modulates mRNA stability, localization,
translation, and polyadenylation. Here, we adapted Plant STARR-seq, a massively parallel …

Cooperativity and additivity in plant enhancers

T Jores, J Tonnies, NA Mueth, A Romanowski, S Fields… - bioRxiv, 2023 - biorxiv.org
Enhancers are cis-regulatory elements that shape gene expression in response to
numerous developmental and environmental cues. In animals, several models have been …

Features that Govern Terminator Strength in Plants

S Gorjifard, T Jores, J Tonnies, NA Mueth, K Bubb… - bioRxiv, 2023 - biorxiv.org
The 3'end of a gene, often called a terminator, modulates mRNA stability, localization,
translation, and polyadenylation. Here, we adapted Plant STARR-seq, a massively parallel …

Erlernen der regulatorischen Grammatik von Pflanzen

T Jores - BIOspektrum, 2024 - Springer
Faced with accelerating climate change and rapid population growth, we need crops with
higher yields and greater resilience to ensure food security. Crop genome engineering will …

Transcript cleavage and polyadenylation in plants

S Gorjifard - 2023 - search.proquest.com
Eukaryotic gene expression is finely regulated at the post-transcriptional level by the
untranslated regions of mRNA. The coding sequence (CDS) of mRNA is flanked by 5'-and 3' …