Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Fungal identification using molecular tools: a primer for the natural products research community

HA Raja, AN Miller, CJ Pearce… - Journal of natural …, 2017 - ACS Publications
Fungi are morphologically, ecologically, metabolically, and phylogenetically diverse. They
are known to produce numerous bioactive molecules, which makes them very useful for …

Global ecosystem thresholds driven by aridity

M Berdugo, M Delgado-Baquerizo, S Soliveres… - Science, 2020 - science.org
Aridity, which is increasing worldwide because of climate change, affects the structure and
functioning of dryland ecosystems. Whether aridification leads to gradual (versus abrupt) …

[HTML][HTML] Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

C Wagg, K Schlaeppi, S Banerjee, EE Kuramae… - Nature …, 2019 - nature.com
The soil microbiome is highly diverse and comprises up to one quarter of Earth's diversity.
Yet, how such a diverse and functionally complex microbiome influences ecosystem …

[PDF][PDF] Supplementation with a probiotic mixture accelerates gut microbiome maturation and reduces intestinal inflammation in extremely preterm infants

J Samara, S Moossavi, B Alshaikh, VA Ortega… - Cell host & …, 2022 - cell.com
Probiotics are increasingly administered to premature infants to prevent necrotizing
enterocolitis and neonatal sepsis. However, their effects on gut microbiome assembly and …

The role of multiple global change factors in driving soil functions and microbial biodiversity

MC Rillig, M Ryo, A Lehmann, CA Aguilar-Trigueros… - Science, 2019 - science.org
Soils underpin terrestrial ecosystem functions, but they face numerous anthropogenic
pressures. Despite their crucial ecological role, we know little about how soils react to more …

[HTML][HTML] Plant developmental stage drives the differentiation in ecological role of the maize microbiome

C Xiong, BK Singh, JZ He, YL Han, PP Li, LH Wan… - Microbiome, 2021 - Springer
Background Plants live with diverse microbial communities which profoundly affect multiple
facets of host performance, but if and how host development impacts the assembly, functions …

The global contribution of soil mosses to ecosystem services

DJ Eldridge, E Guirado, PB Reich, R Ochoa-Hueso… - Nature …, 2023 - nature.com
Soil mosses are among the most widely distributed organisms on land. Experiments and
observations suggest that they contribute to terrestrial soil biodiversity and function, yet their …

[HTML][HTML] Disease-induced changes in plant microbiome assembly and functional adaptation

M Gao, C Xiong, C Gao, CKM Tsui, MM Wang, X Zhou… - Microbiome, 2021 - Springer
Background The plant microbiome is an integral part of the host and increasingly recognized
as playing fundamental roles in plant growth and health. Increasing evidence indicates that …

[HTML][HTML] Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin

NA Bokulich, BD Kaehler, JR Rideout, M Dillon… - Microbiome, 2018 - Springer
Background Taxonomic classification of marker-gene sequences is an important step in
microbiome analysis. Results We present q2-feature-classifier (https://github. com/qiime2/q2 …