Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

L Žifčáková, T Větrovský, A Howe… - Environmental …, 2016 - Wiley Online Library
Understanding the ecology of coniferous forests is very important because these
environments represent globally largest carbon sinks. Metatranscriptomics, microbial …

Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing

DP Smith, KG Peay - PloS one, 2014 - journals.plos.org
Recent advances in molecular approaches and DNA sequencing have greatly progressed
the field of ecology and allowed for the study of complex communities in unprecedented …

PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives

L Tedersoo, A Tooming‐Klunderud… - New Phytologist, 2018 - Wiley Online Library
Second‐generation, high‐throughput sequencing methods have greatly improved our
understanding of the ecology of soil microorganisms, yet the short barcodes (< 500 bp) …

Comparison and validation of some ITS primer pairs useful for fungal metabarcoding studies

M Op De Beeck, B Lievens, P Busschaert, S Declerck… - PloS one, 2014 - journals.plos.org
Current metabarcoding studies aiming to characterize microbial communities generally rely
on the amplification and sequencing of relatively short DNA regions. For fungi, the internal …

Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem

H Yao, X Sun, C He, P Maitra, XC Li, LD Guo - Microbiome, 2019 - Springer
Background Revealing the relationship between plants and fungi is very important in
understanding biodiversity maintenance, community stability, and ecosystem functioning …

Drought consistently alters the composition of soil fungal and bacterial communities in grasslands from two continents

R Ochoa‐Hueso, SL Collins… - Global change …, 2018 - Wiley Online Library
The effects of short‐term drought on soil microbial communities remain largely unexplored,
particularly at large scales and under field conditions. We used seven experimental sites …

A group of ectomycorrhizal fungi restricts organic matter accumulation in boreal forest

BD Lindahl, J Kyaschenko, K Varenius… - Ecology …, 2021 - Wiley Online Library
Boreal forest soils are important global carbon sinks, with significant storage in the organic
topsoil. Decomposition of these stocks requires oxidative enzymes, uniquely produced by …

Using environmental DNA to census marine fishes in a large mesocosm

RP Kelly, JA Port, KM Yamahara, LB Crowder - PloS one, 2014 - journals.plos.org
The ocean is a soup of its resident species' genetic material, cast off in the forms of
metabolic waste, shed skin cells, or damaged tissue. Sampling this environmental DNA …

Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline

C Pauvert, M Buée, V Laval, V Edel-Hermann… - Fungal Ecology, 2019 - Elsevier
Fungal communities associated with plants and soil influence plant fitness and ecosystem
functioning. They are frequently studied by metabarcoding approaches targeting the …

Increased yield and CO2 sequestration potential with the C4 cereal Sorghum bicolor cultivated in basaltic rock dust‐amended agricultural soil

ME Kelland, PW Wade, AL Lewis… - Global Change …, 2020 - Wiley Online Library
Land‐based enhanced rock weathering (ERW) is a biogeochemical carbon dioxide removal
(CDR) strategy aiming to accelerate natural geological processes of carbon sequestration …