Let me upgrade you: impact of mobile genetic elements on enterococcal adaptation and evolution
Enterococci are Gram-positive bacteria that have evolved to thrive as both commensals and
pathogens, largely due to their accumulation of mobile genetic elements via horizontal gene …
pathogens, largely due to their accumulation of mobile genetic elements via horizontal gene …
Metaproteomics reveals insights into microbial structure, interactions, and dynamic regulation in defined communities as they respond to environmental disturbance
Background Microbe-microbe interactions between members of the plant rhizosphere are
important but remain poorly understood. A more comprehensive understanding of the …
important but remain poorly understood. A more comprehensive understanding of the …
Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction
Information derived from metagenome sequences through deep-learning techniques has
significantly improved the accuracy of template free protein structure modeling. However …
significantly improved the accuracy of template free protein structure modeling. However …
MetaDecoder: a novel method for clustering metagenomic contigs
CC Liu, SS Dong, JB Chen, C Wang, P Ning, Y Guo… - Microbiome, 2022 - Springer
Background Clustering the metagenomic contigs into potential genomes is a key step to
investigate the functional roles of microbial populations. Existing algorithms have achieved …
investigate the functional roles of microbial populations. Existing algorithms have achieved …
PLaBAse: A comprehensive web resource for analyzing the plant growth-promoting potential of plant-associated bacteria
Plant-beneficial microorganisms are gaining importance for sustainable plant production
and phytosanitary practices. Yet there is a lack of computational approaches targeting …
and phytosanitary practices. Yet there is a lack of computational approaches targeting …
Deep learning and CRISPR-Cas13d ortholog discovery for optimized RNA targeting
Effective and precise mammalian transcriptome engineering technologies are needed to
accelerate biological discovery and RNA therapeutics. Despite the promise of …
accelerate biological discovery and RNA therapeutics. Despite the promise of …
The notable achievements and the prospects of bacterial pathogen genomics
Throughout the entirety of human history, bacterial pathogens have played an important role
and even shaped the fate of civilizations. The application of genomics within the last 27 …
and even shaped the fate of civilizations. The application of genomics within the last 27 …
Comparative genome analysis among Variovorax species and genome guided aromatic compound degradation analysis emphasizing 4-hydroxybenzoate …
N Ghimire, B Kim, CM Lee, TJ Oh - BMC genomics, 2022 - Springer
Abstract Background While the genus Variovorax is known for its aromatic compound
metabolism, no detailed study of the peripheral and central pathways of aromatic compound …
metabolism, no detailed study of the peripheral and central pathways of aromatic compound …
[HTML][HTML] High potential for biomass-degrading enzymes revealed by hot spring metagenomics
Enzyme stability and activity at elevated temperatures are important aspects in
biotechnological industries, such as the conversion of plant biomass into biofuels. In order to …
biotechnological industries, such as the conversion of plant biomass into biofuels. In order to …
Biochemistry of methanol‐dependent acetogenesis in Eubacterium callanderi KIST612
HM Dietrich, F Kremp, C Öppinger… - Environmental …, 2021 - Wiley Online Library
Methanol is the simplest of all alcohols, is universally distributed in anoxic sediments as a
result of plant material decomposition and is constantly attracting attention as an interesting …
result of plant material decomposition and is constantly attracting attention as an interesting …