Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
Phylogenetic tree building in the genomic age
Knowing phylogenetic relationships among species is fundamental for many studies in
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …
Using PhyloSuite for molecular phylogeny and tree‐based analyses
CY Xiang, F Gao, I Jakovlić, HP Lei, Y Hu, H Zhang… - Imeta, 2023 - Wiley Online Library
Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced
researchers, conquering the large number of software programs required for a multilocus …
researchers, conquering the large number of software programs required for a multilocus …
The origin and diversification of mitochondria
Mitochondria are best known for their role in the generation of ATP by aerobic respiration.
Yet, research in the past half century has shown that they perform a much larger suite of …
Yet, research in the past half century has shown that they perform a much larger suite of …
Fungal identification using molecular tools: a primer for the natural products research community
Fungi are morphologically, ecologically, metabolically, and phylogenetically diverse. They
are known to produce numerous bioactive molecules, which makes them very useful for …
are known to produce numerous bioactive molecules, which makes them very useful for …
AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential
M Alanjary, K Steinke, N Ziemert - Nucleic Acids Research, 2019 - academic.oup.com
Understanding the evolutionary background of a bacterial isolate has applications for a wide
range of research. However generating an accurate species phylogeny remains …
range of research. However generating an accurate species phylogeny remains …
Epidemiology of mobile colistin resistance genes mcr-1 to mcr-9
The identification of the first mobile colistin resistance (MCR) gene, mcr-1, in 2015 triggered
a rash of mcr screening reports. Subsequently, nine MCR-family genes and their variants …
a rash of mcr screening reports. Subsequently, nine MCR-family genes and their variants …
RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language
Programs for Bayesian inference of phylogeny currently implement a unique and fixed suite
of models. Consequently, users of these software packages are simultaneously forced to …
of models. Consequently, users of these software packages are simultaneously forced to …
The use of next generation sequencing for improving food safety: Translation into practice
B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet… - Food …, 2019 - Elsevier
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
Inferring whole-genome histories in large population datasets
Inferring the full genealogical history of a set of DNA sequences is a core problem in
evolutionary biology, because this history encodes information about the events and forces …
evolutionary biology, because this history encodes information about the events and forces …