Plant small RNAs: their biogenesis, regulatory roles, and functions

J Zhan, BC Meyers - Annual Review of Plant Biology, 2023 - annualreviews.org
Plant cells accumulate small RNA molecules that regulate plant development, genome
stability, and environmental responses. These small RNAs fall into three major classes …

Keeping up with the miRNAs: current paradigms of the biogenesis pathway

R Mencia, L Gonzalo, I Tossolini… - Journal of …, 2023 - academic.oup.com
For many years we have studied the processes involved in producing miRNAs in plants and
the numerous differences from their metazoan counterpart. A well-defined catalytic process …

Non–B-form DNA tends to form in centromeric regions and has undergone changes in polyploid oat subgenomes

Q Liu, C Yi, Z Zhang, H Su, C Liu… - Proceedings of the …, 2023 - National Acad Sciences
Centromeres are the specialized regions of the chromosomes that direct faithful
chromosome segregation during cell division. Despite their functional conservation …

Recent insights into plant miRNA biogenesis: multiple layers of miRNA level regulation

M Bajczyk, A Jarmolowski, M Jozwiak, A Pacak… - Plants, 2023 - mdpi.com
MicroRNAs are small RNAs, 20–22 nt long, the main role of which is to downregulate gene
expression at the level of mRNAs. MiRNAs are fundamental regulators of plant growth and …

Cotranscriptional RNA processing and modification in plants

S Marquardt, E Petrillo, PA Manavella - The Plant Cell, 2023 - academic.oup.com
The activities of RNA polymerases shape the epigenetic landscape of genomes with
profound consequences for genome integrity and gene expression. A fundamental event …

Parallel degradome-seq and DMS-MaPseq substantially revise the miRNA biogenesis atlas in Arabidopsis

X Yan, C Li, K Liu, T Zhang, Q Xu, X Li, J Zhu, Z Wang… - Nature Plants, 2024 - nature.com
MicroRNAs (miRNAs) are produced from highly structured primary transcripts (pri-miRNAs)
and regulate numerous biological processes in eukaryotes. Due to the extreme …

Plant long non-coding RNAs: biologically relevant and mechanistically intriguing

J Yang, F Ariel, D Wang - Journal of Experimental Botany, 2023 - academic.oup.com
Long non-coding RNAs (lncRNAs) are a group of RNAs greater than 200 nucleotides in
length exhibiting low or no coding potential that are involved in diverse biological functions …

Functions and mechanisms of RNA helicases in plants

X Li, C Li, J Zhu, S Zhong, H Zhu… - Journal of Experimental …, 2023 - academic.oup.com
RNA helicases (RHs) are a family of ubiquitous enzymes that alter RNA structures and
remodel ribonucleoprotein complexes typically using energy from the hydrolysis of ATP …

TATDN2 resolution of R-loops is required for survival of BRCA1-mutant cancer cells

AS Jaiswal, A Dutta, G Srinivasan, Y Yuan… - Nucleic acids …, 2023 - academic.oup.com
BRCA1-deficient cells have increased IRE1 RNase, which degrades multiple microRNAs.
Reconstituting expression of one of these, miR-4638–5p, resulted in synthetic lethality in …

Chromatin-associated microprocessor assembly is regulated by the U1 snRNP auxiliary protein PRP40

A Stepien, J Dolata, T Gulanicz, D Bielewicz… - The Plant …, 2022 - academic.oup.com
In plants, microRNA (miRNA) biogenesis involves cotranscriptional processing of RNA
polymerase II (RNAPII)-generated primary transcripts by a multi-protein complex termed the …