Satellite DNA evolution: old ideas, new approaches
SS Lower, MP McGurk, AG Clark… - Current opinion in genetics …, 2018 - Elsevier
A substantial portion of the genomes of most multicellular eukaryotes consists of large arrays
of tandemly repeated sequence, collectively called satellite DNA. The processes generating …
of tandemly repeated sequence, collectively called satellite DNA. The processes generating …
[HTML][HTML] Transposable elements as a source of novel repetitive DNA in the eukaryote genome
ML Zattera, DP Bruschi - Cells, 2022 - mdpi.com
The impact of transposable elements (TEs) on the evolution of the eukaryote genome has
been observed in a number of biological processes, such as the recruitment of the host's …
been observed in a number of biological processes, such as the recruitment of the host's …
The genetic and epigenetic landscape of the Arabidopsis centromeres
INTRODUCTION The centromeres of eukaryotic chromosomes assemble the multiprotein
kinetochore complex and thereby position attachment to the spindle microtubules, allowing …
kinetochore complex and thereby position attachment to the spindle microtubules, allowing …
High-Quality Arabidopsis Thaliana Genome Assembly with Nanopore and HiFi Long Reads
Arabidopsis thaliana is an important and long-established model species for plant molecular
biology, genetics, epigenetics, and genomics. However, the latest version of reference …
biology, genetics, epigenetics, and genomics. However, the latest version of reference …
One-step genome editing of elite crop germplasm during haploid induction
T Kelliher, D Starr, X Su, G Tang, Z Chen, J Carter… - Nature …, 2019 - nature.com
Genome editing using CRISPR–Cas9 works efficiently in plant cells, but delivery of genome-
editing machinery into the vast majority of crop varieties is not possible using established …
editing machinery into the vast majority of crop varieties is not possible using established …
TRASH: tandem repeat annotation and structural hierarchy
P Wlodzimierz, M Hong, IR Henderson - Bioinformatics, 2023 - academic.oup.com
Motivation The advent of long-read DNA sequencing is allowing complete assembly of
highly repetitive genomic regions for the first time, including the megabase-scale satellite …
highly repetitive genomic regions for the first time, including the megabase-scale satellite …
Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation
Eukaryotic centromeres contain the kinetochore, which connects chromosomes to the
spindle allowing segregation. During meiosis, centromeres are suppressed for inter …
spindle allowing segregation. During meiosis, centromeres are suppressed for inter …
Epigenetically mismatched parental centromeres trigger genome elimination in hybrids
Wide crosses result in postzygotic elimination of one parental chromosome set, but the
mechanisms that result in such differential fate are poorly understood. Here, we show that …
mechanisms that result in such differential fate are poorly understood. Here, we show that …
A chromosome‐level genome assembly of radish (Raphanus sativus L.) reveals insights into genome adaptation and differential bolting regulation
L Xu, Y Wang, J Dong, W Zhang, M Tang… - Plant Biotechnology …, 2023 - Wiley Online Library
High‐quality radish (Raphanus sativus) genome represents a valuable resource for
agronomical trait improvements and understanding genome evolution among Brassicaceae …
agronomical trait improvements and understanding genome evolution among Brassicaceae …
Centromere plasticity with evolutionary conservation and divergence uncovered by wheat 10+ genomes
H Ma, W Ding, Y Chen, J Zhou, W Chen… - Molecular Biology …, 2023 - academic.oup.com
Centromeres (CEN) are the chromosomal regions that play a crucial role in maintaining
genomic stability. The underlying highly repetitive DNA sequences can evolve quickly in …
genomic stability. The underlying highly repetitive DNA sequences can evolve quickly in …