m6A mRNA methylation controls T cell homeostasis by targeting the IL-7/STAT5/SOCS pathways

HB Li, J Tong, S Zhu, PJ Batista, EE Duffy, J Zhao… - Nature, 2017 - nature.com
Abstract N 6-methyladenosine (m6A) is the most common and abundant messenger RNA
modification, modulated by 'writers','erasers' and 'readers' of this mark,. In vitro data have …

Polycyclic aromatic hydrocarbons in deep sea sediments: Microbe–pollutant interactions in a remote environment

A Louvado, NCM Gomes, MMQ Simões… - Science of the Total …, 2015 - Elsevier
Recalcitrant polycyclic aromatic hydrocarbons (PAHs) released into seawater end up in the
deep sea sediments (DSSs). However, their fate here is often oversimplified by theoretical …

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

L Sun, H Luo, D Bu, G Zhao, K Yu, C Zhang… - Nucleic acids …, 2013 - academic.oup.com
It is a challenge to classify protein-coding or non-coding transcripts, especially those re-
constructed from high-throughput sequencing data of poorly annotated species. This study …

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

M Gulia-Nuss, AB Nuss, JM Meyer… - Nature …, 2016 - nature.com
Ticks transmit more pathogens to humans and animals than any other arthropod. We
describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors …

Ensembl 2014

P Flicek, MR Amode, D Barrell, K Beal… - Nucleic acids …, 2014 - academic.oup.com
Abstract Ensembl (http://www. ensembl. org) creates tools and data resources to facilitate
genomic analysis in chordate species with an emphasis on human, major vertebrate model …

Update on activities at the Universal Protein Resource (UniProt) in 2013

UniProt Consortium - Nucleic acids research, 2012 - academic.oup.com
The mission of the Universal Protein Resource (UniProt)(http://www. uniprot. org) is to
support biological research by providing a freely accessible, stable, comprehensive, fully …

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs

RM Waterhouse, F Tegenfeldt, J Li… - Nucleic acids …, 2013 - academic.oup.com
The concept of orthology provides a foundation for formulating hypotheses on gene and
genome evolution, and thus forms the cornerstone of comparative genomics, phylogenomics …

The influence of machine learning technologies in gut microbiome research and cancer studies-A review

T Loganathan - Life Sciences, 2022 - Elsevier
Gut microbial profiles induce cancer growth and impact treatment effectiveness, tolerance,
and safety. There is still more to discover about the relationship between diseases and the …

RNA‐S eq bulked segregant analysis enables the identification of high‐resolution genetic markers for breeding in hexaploid wheat

RH Ramirez‐Gonzalez, V Segovia… - Plant biotechnology …, 2015 - Wiley Online Library
The identification of genetic markers linked to genes of agronomic importance is a major aim
of crop research and breeding programmes. Here, we identify markers for Yr15, a major …

Ensembl Genomes 2013: scaling up access to genome-wide data

PJ Kersey, JE Allen, M Christensen… - Nucleic acids …, 2014 - academic.oup.com
Abstract Ensembl Genomes (http://www. ensemblgenomes. org) is an integrating resource
for genome-scale data from non-vertebrate species. The project exploits and extends …