[HTML][HTML] Techniques of using circulating tumor DNA as a liquid biopsy component in cancer management

M Elazezy, SA Joosse - Computational and structural biotechnology journal, 2018 - Elsevier
Precision medicine in the clinical management of cancer may be achieved through the
diagnostic platform called “liquid biopsy”. This method utilizes the detection of biomarkers in …

[HTML][HTML] A review of somatic single nucleotide variant calling algorithms for next-generation sequencing data

C Xu - Computational and structural biotechnology journal, 2018 - Elsevier
Detection of somatic mutations holds great potential in cancer treatment and has been a
very active research field in the past few years, especially since the breakthrough of the next …

[HTML][HTML] Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel …

LE MacConaill, RT Burns, A Nag, HA Coleman… - BMC genomics, 2018 - Springer
Background Sample index cross-talk can result in false positive calls when massively
parallel sequencing (MPS) is used for sensitive applications such as low-frequency somatic …

[HTML][HTML] Clonal evolution and heterogeneity of osimertinib acquired resistance mechanisms in EGFR mutant lung cancer

N Roper, AL Brown, JS Wei, S Pack, C Trindade… - Cell reports …, 2020 - cell.com
Clonal evolution of osimertinib-resistance mechanisms in EGFR mutant lung
adenocarcinoma is poorly understood. Using multi-region whole-exome and RNA …

Early detection of ovarian cancer

KM Elias, J Guo, RC Bast - Hematology/Oncology Clinics, 2018 - hemonc.theclinics.com
The rationale for early detection of ovarian cancer is compelling. Ovarian cancer confined to
the ovaries (stage I) can be cured in up to 90% of patients, and disease confined to the …

[HTML][HTML] Bam-readcount-rapid generation of basepair-resolution sequence metrics

A Khanna, DE Larson, SN Srivatsan, M Mosior… - ArXiv, 2021 - ncbi.nlm.nih.gov
Bam-readcount is a utility for generating low-level information about sequencing data at
specific nucleotide positions. Originally designed to help filter genomic mutation calls, the …

[HTML][HTML] Tumor markers and their diagnostic significance in ovarian cancer

A Matsas, D Stefanoudakis, T Troupis, K Kontzoglou… - Life, 2023 - mdpi.com
Ovarian cancer (OC) is characterized by silent progression and late-stage diagnosis. It is
critical to detect and accurately diagnose the disease early to improve survival rates. Tumor …

Patient-derived tumor-like cell clusters for drug testing in cancer therapy

S Yin, R Xi, A Wu, S Wang, Y Li, C Wang… - Science Translational …, 2020 - science.org
Several patient-derived tumor models emerged recently as robust preclinical drug-testing
platforms. However, their potential to guide clinical therapy remained unclear. Here, we …

Bioinformatics for precision oncology

J Singer, A Irmisch, HJ Ruscheweyh… - Briefings in …, 2019 - academic.oup.com
Molecular profiling of tumor biopsies plays an increasingly important role not only in cancer
research, but also in the clinical management of cancer patients. Multi-omics approaches …

[HTML][HTML] Tissue-plasma TMB comparison and plasma TMB monitoring in patients with metastatic non-small cell lung cancer receiving immune checkpoint inhibitors

A Friedlaender, T Nouspikel, Y Christinat, L Ho… - Frontiers in …, 2020 - frontiersin.org
Immuno-oncology is an ever growing field that has seen important progress across the
spectrum of cancers. Responses can be deep and durable. However, as only a minority of …