Bayesian molecular dating: opening up the black box
Molecular dating analyses allow evolutionary timescales to be estimated from genetic data,
offering an unprecedented capacity for investigating the evolutionary past of all species …
offering an unprecedented capacity for investigating the evolutionary past of all species …
Temporal signal and the phylodynamic threshold of SARS-CoV-2
S Duchene, L Featherstone… - Virus …, 2020 - academic.oup.com
The ongoing SARS-CoV-2 outbreak marks the first time that large amounts of genome
sequence data have been generated and made publicly available in near real time. Early …
sequence data have been generated and made publicly available in near real time. Early …
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan… - PLoS computational …, 2019 - journals.plos.org
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary …
years with major new advances in nearly all aspects of the joint modelling of evolutionary …
[PDF][PDF] Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Abstract The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package
has become a primary tool for Bayesian phylogenetic and phylodynamic inference from …
has become a primary tool for Bayesian phylogenetic and phylodynamic inference from …
Paleomicrobiology: diagnosis and evolution of ancient pathogens
The last century has witnessed progress in the study of ancient infectious disease from
purely medical descriptions of past ailments to dynamic interpretations of past population …
purely medical descriptions of past ailments to dynamic interpretations of past population …
Model selection may not be a mandatory step for phylogeny reconstruction
Determining the most suitable model for phylogeny reconstruction constitutes a fundamental
step in numerous evolutionary studies. Over the years, various criteria for model selection …
step in numerous evolutionary studies. Over the years, various criteria for model selection …
Rapid expansion and visual specialisation of learning and memory centres in the brains of Heliconiini butterflies
Abstract Changes in the abundance and diversity of neural cell types, and their connectivity,
shape brain composition and provide the substrate for behavioral evolution. Although …
shape brain composition and provide the substrate for behavioral evolution. Although …
Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
Recent developments in marginal likelihood estimation for model selection in the field of
Bayesian phylogenetics and molecular evolution have emphasized the poor performance of …
Bayesian phylogenetics and molecular evolution have emphasized the poor performance of …
A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative data
Our understanding of macroevolutionary patterns of adaptive evolution has greatly
increased with the advent of large-scale phylogenetic comparative methods. Widely used …
increased with the advent of large-scale phylogenetic comparative methods. Widely used …
Bayesian random local clocks, or one rate to rule them all
AJ Drummond, MA Suchard - BMC biology, 2010 - Springer
Background Relaxed molecular clock models allow divergence time dating and" relaxed
phylogenetic" inference, in which a time tree is estimated in the face of unequal rates across …
phylogenetic" inference, in which a time tree is estimated in the face of unequal rates across …