The promise and pitfalls of synteny in phylogenomics
JL Steenwyk, N King - Plos Biology, 2024 - journals.plos.org
Reconstructing the tree of life remains a central goal in biology. Early methods, which relied
on small numbers of morphological or genetic characters, often yielded conflicting …
on small numbers of morphological or genetic characters, often yielded conflicting …
Common methods for phylogenetic Tree Construction and their implementation in R
Y Zou, Z Zhang, Y Zeng, H Hu, Y Hao, S Huang, B Li - Bioengineering, 2024 - mdpi.com
A phylogenetic tree can reflect the evolutionary relationships between species or gene
families, and they play a critical role in modern biological research. In this review, we …
families, and they play a critical role in modern biological research. In this review, we …
Evolution and genetic architecture of sex-limited polymorphism in cuckoos
J Merondun, CI Marques, P Andrade… - Science …, 2024 - science.org
Sex-limited polymorphism has evolved in many species including our own. Yet, we lack a
detailed understanding of the underlying genetic variation and evolutionary processes at …
detailed understanding of the underlying genetic variation and evolutionary processes at …
Phylogenomics of Psammodynastes and Buhoma (Elapoidea: Serpentes), with the description of a new Asian snake family
S Das, E Greenbaum, J Brecko, OSG Pauwels… - Scientific Reports, 2024 - nature.com
Asian mock vipers of the genus Psammodynastes and African forest snakes of the genus
Buhoma are two genera belonging to the snake superfamily Elapoidea. The phylogenetic …
Buhoma are two genera belonging to the snake superfamily Elapoidea. The phylogenetic …
Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus
JL Steenwyk, C Balamurugan, HA Raja… - Microbiology …, 2024 - Am Soc Microbiol
Modern taxonomic classification is often based on phylogenetic analyses of a few molecular
markers, although single-gene studies are still common. Here, we leverage genome-scale …
markers, although single-gene studies are still common. Here, we leverage genome-scale …
The Bryophyte Phylogeny Group: A revised familial classification system based on plastid phylogenomic data
YF Li, L Luo, Y Liu, Q He, NN Yu… - … of Systematics and …, 2024 - Wiley Online Library
Bryophytes, a monophyletic group comprising three major lineages, diversified soon after
the terrestrialization of land plants. However, their internal phylogenetic relationships remain …
the terrestrialization of land plants. However, their internal phylogenetic relationships remain …
Ancient and recent origins of shared polymorphisms in yeast
Shared genetic polymorphisms between populations and species can be ascribed to
ancestral variation or to more recent gene flow. Here, we mapped shared polymorphisms in …
ancestral variation or to more recent gene flow. Here, we mapped shared polymorphisms in …
Putative genome contamination has minimal impact on the GTDB taxonomy
The Genome Taxonomy Database (GTDB) provides a species to domain classification of
publicly available genomes based on average nucleotide identity (ANI)(for species) and a …
publicly available genomes based on average nucleotide identity (ANI)(for species) and a …
Phylogenomic perspectives on speciation and reproductive isolation in a North American biodiversity hotspot: an example using California sages (Salvia subgenus …
Abstract Background and Aims The California Floristic Province (CA-FP) is the most species-
rich region of North America north of Mexico. One of several proposed hypotheses …
rich region of North America north of Mexico. One of several proposed hypotheses …
Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
Reconstructing evolutionary trajectories and transitions that have shaped floral diversity
relies heavily on the phylogenetic framework on which traits are modelled. In this study, we …
relies heavily on the phylogenetic framework on which traits are modelled. In this study, we …