Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES

A Gupta, S Mirarab, Y Turakhia - bioRxiv, 2024 - biorxiv.org
Inference of species trees plays a crucial role in advancing our understanding of
evolutionary relationships and has immense significance for diverse biological and medical …

Armillaria korhonenii, the sixteenth biological species of Armillaria from China

J Liu, G Qin, J Chen, J Song, Z Yan, S Yang, M Tian… - bioRxiv, 2023 - biorxiv.org
Armillaria korhonenii, designated as Chinese biological species Q (CBSQ) here, is
described as a new species based on phylogenetic and morphological evidence as well as …

The genus Cortinarius should not (yet) be split

B Gallone, TW Kuyper, J Nuytinck - bioRxiv, 2024 - biorxiv.org
The genus Cortinarius (Pers.) Gray (Agaricales, Basidiomycota) is one of the most species-
rich fungal genera with thousands of species reported. Cortinarius species are important …

Candida glabrata maintains two Hap1 homologs, Zcf27 andZcf4, for distinct roles in ergosterol gene regulation to mediate sterol homeostasis under azole and …

D Saha, JB Gregor, S Hoda, KE Eastman, M Navarrete… - bioRxiv, 2024 - biorxiv.org
Candida glabrata exhibits innate resistance to azole antifungal drugs but also has the
propensity to rapidly develop clinical drug resistance. Azole drugs, which target Erg11, is …

The complete plastome and phylogenetic analysis of Commelina benghalensis L.1753 (Commelinaceae)

L Wang, S Zhang, H Li, S Wang - Mitochondrial DNA Part B, 2024 - Taylor & Francis
Commelina benghalensis L. 1753, a member of the Commelinaceae family, holds significant
medicinal and culinary value. This study represents the first documentation of the …

Phylogenomics reveals high levels of incomplete lineage sorting at the ancestral nodes of the macaque radiation

X Tan, J Qi, Z Liu, P Fan, G Liu, L Zhang… - Molecular Biology …, 2023 - academic.oup.com
The genus Macaca includes 23 species assigned into 4 to 7 groups. It exhibits the largest
geographic range and represents the most successful example of adaptive radiation of …

Reticulate Evolution: Detection and Utility in the Phylogenomics Era

S Bjornson, H Verbruggen, N Upham, J Steenwyk - 2024 - preprints.org
Phylogenomics has enriched our understanding that the Tree of Life can have network-like
or reticulate structures among some taxa and genes. Non-vertical modes of evolution—such …

[PDF][PDF] Molecular Epidemiology of SARS-CoV-2 in Malawi: A Comparative Investigation of the COVID-19 Pandemic Mitigation and Progression

LB Chabuka - 2023 - scholar.sun.ac.za
Abstract Nations in Eastern and Southern Africa collectively reported> 23 million cases of
COVID-19 from 2020 until 2023. The case numbers are, however, likely to be widely …

[PDF][PDF] A taxonomic revision of the genus Eperua (Leguminosae

D Detarioideae - ELENICE APARECIDA FORTES, 2024 - repositorio.unicamp.br
We present a comprehensive taxonomic revision of the tree genus Eperua, encompassing
several significant findings. We identify and recognize a total of 19 species (including two …

[图书][B] Big Data Phylogenomics: Methods and Applications

S Sharma - 2023 - search.proquest.com
Phylogenomics, the study of genome-scale data containing many genes and species, has
advanced our understanding of patterns of evolutionary relationships and processes …