Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
[HTML][HTML] Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and …
The Eurotiales is a relatively large order of Ascomycetes with members frequently having
positive and negative impact on human activities. Species within this order gain attention …
positive and negative impact on human activities. Species within this order gain attention …
[HTML][HTML] Characterisation of SARS-CoV-2 variants in Beijing during 2022: an epidemiological and phylogenetic analysis
Y Pan, L Wang, Z Feng, H Xu, F Li, Y Shen, D Zhang… - The lancet, 2023 - thelancet.com
Background Due to the national dynamic zero-COVID strategy in China, there were no
persistent local transmissions of SARS-CoV-2 in Beijing before December, 2022. However …
persistent local transmissions of SARS-CoV-2 in Beijing before December, 2022. However …
[HTML][HTML] SARS-CoV-2 spike L452R variant evades cellular immunity and increases infectivity
C Motozono, M Toyoda, J Zahradnik, A Saito… - Cell host & …, 2021 - cell.com
Many SARS-CoV-2 variants with naturally acquired mutations have emerged. These
mutations can affect viral properties such as infectivity and immune resistance. Although the …
mutations can affect viral properties such as infectivity and immune resistance. Although the …
raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML
D Edler, J Klein, A Antonelli… - Methods in ecology and …, 2021 - Wiley Online Library
Abstract raxmlGUI is a graphical user interface to RAxML, one of the most popular and
widely used softwares for phylogenetic inference using maximum likelihood. Here we …
widely used softwares for phylogenetic inference using maximum likelihood. Here we …
Mosquito vector competence for dengue is modulated by insect-specific viruses
RP Olmo, YMH Todjro, ERGR Aguiar… - Nature …, 2023 - nature.com
Aedes aegypti and A. albopictus mosquitoes are the main vectors for dengue virus (DENV)
and other arboviruses, including Zika virus (ZIKV). Understanding the factors that affect …
and other arboviruses, including Zika virus (ZIKV). Understanding the factors that affect …
Phylogenetic tree building in the genomic age
Knowing phylogenetic relationships among species is fundamental for many studies in
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …
[HTML][HTML] Petabase-scale sequence alignment catalyses viral discovery
Public databases contain a planetary collection of nucleic acid sequences, but their
systematic exploration has been inhibited by a lack of efficient methods for searching this …
systematic exploration has been inhibited by a lack of efficient methods for searching this …
[PDF][PDF] Genomic sequencing of SARS-CoV-2: a guide to implementation for maximum impact on public health, 8 January 2021
World Health Organization - 2021 - apps.who.int
The year 2020 was a turning point in history and in global health. The COVID-19 pandemic
has highlighted the potential for deadly epidemic-prone diseases to overwhelm our …
has highlighted the potential for deadly epidemic-prone diseases to overwhelm our …
Species diversity, updated classification and divergence times of the phylum Mucoromycota
H Zhao, Y Nie, TK Zong, K Wang, ML Lv, YJ Cui… - Fungal Diversity, 2023 - Springer
Zygomycetes are phylogenetically early diverging, ecologically diverse, industrially
valuable, agriculturally beneficial, and clinically pathogenic fungi. Although new phyla and …
valuable, agriculturally beneficial, and clinically pathogenic fungi. Although new phyla and …