Macromolecular modeling and design in Rosetta: recent methods and frameworks
The Rosetta software for macromolecular modeling, docking and design is extensively used
in laboratories worldwide. During two decades of development by a community of …
in laboratories worldwide. During two decades of development by a community of …
COVID-19 intranasal vaccines: current progress, advantages, prospects, and challenges
Multiple vaccines have recently been developed, and almost all the countries are presently
vaccinating their population to tackle the COVID-19 pandemic. Most of the COVID-19 …
vaccinating their population to tackle the COVID-19 pandemic. Most of the COVID-19 …
Elucidating solution structures of cyclic peptides using molecular dynamics simulations
Protein–protein interactions are vital to biological processes, but the shape and size of their
interfaces make them hard to target using small molecules. Cyclic peptides have shown …
interfaces make them hard to target using small molecules. Cyclic peptides have shown …
Strategic Feature Selection for Enhanced Scorch Prediction in Flexible Polyurethane Form Manufacturing
F Omoruwou, AA Ojugo… - Journal of Computing …, 2024 - publikasi2.dinus.ac.id
The occurrence of scorch during the production of flexible polyurethane is a significant issue
that negatively impacts foam products' resilience and generally jeopardizes their integrity …
that negatively impacts foam products' resilience and generally jeopardizes their integrity …
AutoDock CrankPep: combining folding and docking to predict protein–peptide complexes
Motivation Protein–peptide interactions mediate a wide variety of cellular and biological
functions. Methods for predicting these interactions have garnered a lot of interest over the …
functions. Methods for predicting these interactions have garnered a lot of interest over the …
Investigating protein–peptide interactions using the Schrödinger computational suite
J Bhachoo, T Beuming - Modeling peptide-protein interactions: methods …, 2017 - Springer
The Schrödinger software suite contains a broad array of computational chemistry and
molecular modeling tools that can be used to study the interaction of peptides with proteins …
molecular modeling tools that can be used to study the interaction of peptides with proteins …
[HTML][HTML] Activation of targetable inflammatory immune signaling is seen in myelodysplastic syndromes with SF3B1 mutations
GS Choudhary, A Pellagatti, B Agianian, MA Smith… - Elife, 2022 - elifesciences.org
Background: Mutations in the SF3B1 splicing factor are commonly seen in myelodysplastic
syndromes (MDS) and acute myeloid leukemia (AML), yet the specific oncogenic pathways …
syndromes (MDS) and acute myeloid leukemia (AML), yet the specific oncogenic pathways …
Docking small peptides remains a great challenge: an assessment using AutoDock Vina
R Rentzsch, BY Renard - Briefings in Bioinformatics, 2015 - academic.oup.com
There is a growing interest in the mechanisms and the prediction of how flexible peptides
bind proteins, often in a highly selective and conserved manner. While both existing small …
bind proteins, often in a highly selective and conserved manner. While both existing small …
Use of artificial intelligence to enhance phenotypic drug discovery
S Malandraki-Miller, PR Riley - Drug Discovery Today, 2021 - Elsevier
Highlights•This review re-explores the comparison between phenotypic and target-based
drug discovery and outlines how machine learning (ML) can assist the former at the forefront …
drug discovery and outlines how machine learning (ML) can assist the former at the forefront …
[HTML][HTML] Resistance and adaptation of bacteria to non-antibiotic antibacterial agents: physical stressors, nanoparticles, and bacteriophages
Antimicrobial resistance is a significant threat to human health worldwide, forcing scientists
to explore non-traditional antibacterial agents to support rapid interventions and combat the …
to explore non-traditional antibacterial agents to support rapid interventions and combat the …