Bottom-up coarse-graining: Principles and perspectives
Large-scale computational molecular models provide scientists a means to investigate the
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
Perspective: Advances, challenges, and insight for predictive coarse-grained models
WG Noid - The Journal of Physical Chemistry B, 2023 - ACS Publications
By averaging over atomic details, coarse-grained (CG) models provide profound
computational and conceptual advantages for studying soft materials. In particular, bottom …
computational and conceptual advantages for studying soft materials. In particular, bottom …
Forces are not enough: Benchmark and critical evaluation for machine learning force fields with molecular simulations
Molecular dynamics (MD) simulation techniques are widely used for various natural science
applications. Increasingly, machine learning (ML) force field (FF) models begin to replace ab …
applications. Increasingly, machine learning (ML) force field (FF) models begin to replace ab …
Artificial intelligence for science in quantum, atomistic, and continuum systems
Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …
Machine learned coarse-grained protein force-fields: Are we there yet?
The successful recent application of machine learning methods to scientific problems
includes the learning of flexible and accurate atomic-level force-fields for materials and …
includes the learning of flexible and accurate atomic-level force-fields for materials and …
Machine learning coarse-grained potentials of protein thermodynamics
A generalized understanding of protein dynamics is an unsolved scientific problem, the
solution of which is critical to the interpretation of the structure-function relationships that …
solution of which is critical to the interpretation of the structure-function relationships that …
Flow-matching: Efficient coarse-graining of molecular dynamics without forces
Coarse-grained (CG) molecular simulations have become a standard tool to study molecular
processes on time and length scales inaccessible to all-atom simulations. Parametrizing CG …
processes on time and length scales inaccessible to all-atom simulations. Parametrizing CG …
Slicing and dicing: Optimal coarse-grained representation to preserve molecular kinetics
The aim of molecular coarse-graining approaches is to recover relevant physical properties
of the molecular system via a lower-resolution model that can be more efficiently simulated …
of the molecular system via a lower-resolution model that can be more efficiently simulated …
Vendi sampling for molecular simulations: Diversity as a force for faster convergence and better exploration
Molecular dynamics (MD) is the method of choice for understanding the structure, function,
and interactions of molecules. However, MD simulations are limited by the strong …
and interactions of molecules. However, MD simulations are limited by the strong …
How to gain atomistic insights on reactions at the water/solid interface?
SN Steinmann, C Michel - ACS Catalysis, 2022 - ACS Publications
Reactions at the water/solid interface are central to the development of sustainable
processes, from biomass upgrading to photo-and electrocatalysis. To gain atomistic insight …
processes, from biomass upgrading to photo-and electrocatalysis. To gain atomistic insight …