PADLOC: a web server for the identification of antiviral defence systems in microbial genomes
Most bacteria and archaea possess multiple antiviral defence systems that protect against
infection by phages, archaeal viruses and mobile genetic elements. Our understanding of …
infection by phages, archaeal viruses and mobile genetic elements. Our understanding of …
The Ever-Expanding Pseudomonas Genus: Description of 43 New Species and Partition of the Pseudomonas putida Group
The genus Pseudomonas hosts an extensive genetic diversity and is one of the largest
genera among Gram-negative bacteria. Type strains of Pseudomonas are well known to …
genera among Gram-negative bacteria. Type strains of Pseudomonas are well known to …
Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation
In the modern genomic era, scientists without extensive bioinformatic training need to apply
high-power computational analyses to critical tasks like phage genome annotation. At the …
high-power computational analyses to critical tasks like phage genome annotation. At the …
DNA methylation dynamics and dysregulation delineated by high-throughput profiling in the mouse
We have developed a mouse DNA methylation array that contains 296,070 probes
representing the diversity of mouse DNA methylation biology. We present a mouse …
representing the diversity of mouse DNA methylation biology. We present a mouse …
Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns
JL Weissman, S Hou… - Proceedings of the …, 2021 - National Acad Sciences
Maximal growth rate is a basic parameter of microbial lifestyle that varies over several orders
of magnitude, with doubling times ranging from a matter of minutes to multiple days. Growth …
of magnitude, with doubling times ranging from a matter of minutes to multiple days. Growth …
Diverse variola virus (smallpox) strains were widespread in northern Europe in the Viking Age
INTRODUCTION Variola virus (VARV), the causative agent of smallpox, is estimated to have
killed between 300 million and 500 million people in the 20 th century and was …
killed between 300 million and 500 million people in the 20 th century and was …
Review on the computational genome annotation of sequences obtained by next-generation sequencing
GF Ejigu, J Jung - Biology, 2020 - mdpi.com
Simple Summary Due to the development of high-throughput sequencing technologies,
computational genome annotation of sequences has become one of the principal research …
computational genome annotation of sequences has become one of the principal research …
Microbial genome analysis: the COG approach
MY Galperin, DM Kristensen… - Briefings in …, 2019 - academic.oup.com
For the past 20 years, the Clusters of Orthologous Genes (COG) database had been a
popular tool for microbial genome annotation and comparative genomics. Initially created for …
popular tool for microbial genome annotation and comparative genomics. Initially created for …
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters
Secondary metabolites produced by microorganisms are the main source of bioactive
compounds that are in use as antimicrobial and anticancer drugs, fungicides, herbicides and …
compounds that are in use as antimicrobial and anticancer drugs, fungicides, herbicides and …
Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi
The fast-growing Gram-negative bacterium Vibrio natriegens is an attractive microbial
system for molecular biology and biotechnology due to its remarkably short generation time …
system for molecular biology and biotechnology due to its remarkably short generation time …