Protein post-translational modifications in the regulation of cancer hallmarks

H Wang, L Yang, M Liu, J Luo - Cancer Gene Therapy, 2023 - nature.com
Posttranslational modifications (PTMs) of proteins, the major mechanism of protein function
regulation, play important roles in regulating a variety of cellular physiological and …

AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations

WK Shen, SY Chen, ZQ Gan, YZ Zhang… - Nucleic acids …, 2023 - academic.oup.com
Transcription factors (TFs) are proteins that interact with specific DNA sequences to regulate
gene expression and play crucial roles in all kinds of biological processes. To keep up with …

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1

DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif… - autophagy, 2021 - Taylor & Francis
In 2008, we published the first set of guidelines for standardizing research in autophagy.
Since then, this topic has received increasing attention, and many scientists have entered …

[HTML][HTML] Modulating autophagy to treat diseases: A revisited review on in silico methods

L Wu, W Jin, H Yu, B Liu - Journal of Advanced Research, 2024 - Elsevier
Background Autophagy refers to the conserved cellular catabolic process relevant to
lysosome activity and plays a vital role in maintaining the dynamic equilibrium of intracellular …

[HTML][HTML] A gene toolbox for monitoring autophagy transcription

M Bordi, R De Cegli, B Testa, RA Nixon… - Cell death & …, 2021 - nature.com
Autophagy is a highly dynamic and multi-step process, regulated by many functional protein
units. Here, we have built up a comprehensive and up-to-date annotated gene list for the …

[HTML][HTML] Multi-omics characterization of autophagy-related molecular features for therapeutic targeting of autophagy

M Luo, L Ye, R Chang, Y Ye, Z Zhang, C Liu… - Nature …, 2022 - nature.com
Autophagy is a major contributor to anti-cancer therapy resistance. Many efforts have been
made to understand and overcome autophagy-mediated therapy resistance, but these …

[HTML][HTML] Model-based analysis uncovers mutations altering autophagy selectivity in human cancer

Z Han, W Zhang, W Ning, C Wang, W Deng, Z Li… - Nature …, 2021 - nature.com
Autophagy can selectively target protein aggregates, pathogens, and dysfunctional
organelles for the lysosomal degradation. Aberrant regulation of autophagy promotes …

An integrative multi-omics approach uncovers the regulatory role of CDK7 and CDK4 in autophagy activation induced by silica nanoparticles

C Ruan, C Wang, X Gong, Y Zhang, W Deng, J Zhou… - Autophagy, 2021 - Taylor & Francis
Dysfunction of macroautophagy/autophagy has been postulated as a major cellular
toxicological response to nanomaterials. It has been reported that excessive autophagy …

[PDF][PDF] Autophagic elimination of ribosomes during spermiogenesis provides energy for flagellar motility

Y Lei, X Zhang, Q Xu, S Liu, C Li, H Jiang, H Lin… - Developmental Cell, 2021 - cell.com
How autophagy initiation is regulated and what the functional significance of this regulation
is are unknown. Here, we characterized the role of yeast Vac8 in autophagy initiation …

[HTML][HTML] Database resources of the BIG data center in 2019

BIGDC Members - Nucleic acids research, 2019 - ncbi.nlm.nih.gov
Abstract The BIG Data Center at Beijing Institute of Genomics (BIG) of the Chinese Academy
of Sciences provides a suite of database resources in support of worldwide research …