In silico modelling of cancer nanomedicine, across scales and transport barriers

NR Stillman, M Kovacevic, I Balaz… - NPJ Computational …, 2020 - nature.com
Nanoparticles promise to improve the treatment of cancer through their increasingly
sophisticated functionalisations and ability to accumulate in certain tumours. Yet recent work …

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems

A Ghaffarizadeh, R Heiland, SH Friedman… - PLoS computational …, 2018 - journals.plos.org
Many multicellular systems problems can only be understood by studying how cells move,
grow, divide, interact, and die. Tissue-scale dynamics emerge from systems of many …

History and conceptual developments in vascular biology and angiogenesis research: a personal view

A Bikfalvi - Angiogenesis, 2017 - Springer
Vascular biology is an important scientific domain that has gradually penetrated many
medical and scientific fields. Scientists are most often focused on present problems in their …

The hallmarks of mathematical oncology

JA Bull, HM Byrne - Proceedings of the IEEE, 2022 - ieeexplore.ieee.org
Over the past 25 years, there has been an unparalleled increase in understanding of cancer
biology. This transformation is exemplified by Hanahan and Weinberg's decision in 2011 to …

[HTML][HTML] Chaste: cancer, heart and soft tissue environment

FR Cooper, RE Baker, MO Bernabeu… - Journal of Open …, 2020 - ncbi.nlm.nih.gov
Chaste: Cancer, Heart and Soft Tissue Environment - PMC Back to Top Skip to main content
NIH NLM Logo Access keys NCBI Homepage MyNCBI Homepage Main Content Main …

Seven challenges in the multiscale modeling of multicellular tissues

AG Fletcher, JM Osborne - WIREs mechanisms of disease, 2022 - Wiley Online Library
The growth and dynamics of multicellular tissues involve tightly regulated and coordinated
morphogenetic cell behaviors, such as shape changes, movement, and division, which are …

Abnormal morphology biases hematocrit distribution in tumor vasculature and contributes to heterogeneity in tissue oxygenation

MO Bernabeu, J Köry, JA Grogan… - Proceedings of the …, 2020 - National Acad Sciences
Oxygen heterogeneity in solid tumors is recognized as a limiting factor for therapeutic
efficacy. This heterogeneity arises from the abnormal vascular structure of the tumor, but the …

Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis

JT Nardini, BJ Stolz, KB Flores… - PLOS Computational …, 2021 - journals.plos.org
Angiogenesis is the process by which blood vessels form from pre-existing vessels. It plays
a key role in many biological processes, including embryonic development and wound …

Quantification of spatial and phenotypic heterogeneity in an agent-based model of tumour-macrophage interactions

JA Bull, HM Byrne - PLOS Computational Biology, 2023 - journals.plos.org
We introduce a new spatial statistic, the weighted pair correlation function (wPCF). The
wPCF extends the existing pair correlation function (PCF) and cross-PCF to describe spatial …

[HTML][HTML] Towards the virtual tumor for optimizing radiotherapy treatments of hypoxic tumors: A novel model of heterogeneous tissue vasculature and oxygenation

F Schiavo, EK Lindblom, I Toma-Dasu - Journal of Theoretical Biology, 2022 - Elsevier
Purpose Tumor oxygenation is one of the key features influencing the response of cells to
radiation and chemo therapies. This study presents a novel in silico tumor model simulating …