Enhanced sampling methods for molecular dynamics simulations

J Hénin, T Lelièvre, MR Shirts, O Valsson… - arXiv preprint arXiv …, 2022 - arxiv.org
Enhanced sampling algorithms have emerged as powerful methods to extend the utility of
molecular dynamics simulations and allow the sampling of larger portions of the …

Peptide framework for screening the effects of amino acids on assembly

S Hamsici, AD White, H Acar - Science Advances, 2022 - science.org
Discovery of peptide domains with unique intermolecular interactions is essential for
engineering peptide-based materials. Rather than attempting a brute-force approach, we …

Amyloids on membrane interfaces: implications for neurodegeneration

AK Mahakud, J Shaikh, VV Rifa Iqbal, A Gupta… - The Journal of …, 2022 - Springer
Membrane interfaces are vital for various cellular processes, and their involvement in
neurodegenerative disorders such as Alzheimer's and Parkinson's disease has taken …

[图书][B] Understanding Structure and Dynamics of Peptides Using Simulations and Experiments

DB Amirkulova - 2020 - search.proquest.com
Explaining and predicting experimental results are the goals of molecular simulations.
Molecular simulations that reproduce experimental results give a molecular explanation of …

[图书][B] Studying Multiscale Phenomena with Simulation and Experiments

M Chakraborty - 2020 - search.proquest.com
There are many events in nature, like self-assembly of peptides, which span a wide range of
time and space. While some multiscale phenomena have detrimental effects and play a …