The interaction between ageing and Alzheimer's disease: insights from the hallmarks of ageing

Y Liu, Y Tan, Z Zhang, M Yi, L Zhu, W Peng - Translational …, 2024 - Springer
Ageing is a crucial risk factor for Alzheimer's disease (AD) and is characterised by systemic
changes in both intracellular and extracellular microenvironments that affect the entire body …

STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization

Z Xu, W Wang, T Yang, L Li, X Ma, J Chen… - Nucleic acids …, 2024 - academic.oup.com
Recent technological developments in spatial transcriptomics allow researchers to measure
gene expression of cells and their spatial locations at the single-cell level, generating …

Spatial transcriptomics data and analytical methods: an updated perspective

S Khan, JJ Kim - Drug Discovery Today, 2024 - Elsevier
Spatial transcriptomics (ST) is a newly emerging field that integrates high-resolution imaging
and transcriptomic data to enable the high-throughput analysis of the spatial localization of …

CROST: a comprehensive repository of spatial transcriptomics

G Wang, S Wu, Z Xiong, H Qu, X Fang… - Nucleic Acids …, 2024 - academic.oup.com
The development of spatial transcriptome sequencing technology has revolutionized our
comprehension of complex tissues and propelled life and health sciences into an era of …

STellaris: a web server for accurate spatial mapping of single cells based on spatial transcriptomics data

X Li, C Xiao, J Qi, W Xue, X Xu, Z Mu… - Nucleic acids …, 2023 - academic.oup.com
Single-cell RNA sequencing (scRNA-seq) provides insights into gene expression
heterogeneities in diverse cell types underlying homeostasis, development and pathological …

SCAR: single-cell and Spatially-resolved Cancer Resources

Y Deng, P Chen, J Xiao, M Li, J Shen… - Nucleic Acids …, 2024 - academic.oup.com
Advances in sequencing and imaging technologies offer a unique opportunity to unravel cell
heterogeneity and develop new immunotherapy strategies for cancer research. There is an …

The web-based portal SpatialTME integrates histological images with single-cell and spatial transcriptomics to explore the tumor microenvironment

J Shi, X Wei, Z Xun, X Ding, Y Liu, L Liu, Y Ye - Cancer Research, 2024 - AACR
The tumor microenvironment (TME) represents a complex network in which tumor cells
communicate not only with each other but also with stromal and immune cells. The …

SORC: an integrated spatial omics resource in cancer

W Zhou, M Su, T Jiang, Q Yang, Q Sun… - Nucleic Acids …, 2024 - academic.oup.com
The interactions between tumor cells and the microenvironment play pivotal roles in the
initiation, progression and metastasis of cancer. The advent of spatial transcriptomics data …

SCAN: Spatiotemporal Cloud Atlas for Neural cells

Y Deng, Y Lu, M Li, J Shen, S Qin… - Nucleic Acids …, 2024 - academic.oup.com
The nervous system is one of the most complicated and enigmatic systems within the animal
kingdom. Recently, the emergence and development of spatial transcriptomics (ST) and …

SOAR: a spatial transcriptomics analysis resource to model spatial variability and cell type interactions

Y Li, S Dennis, MR Hutch, Y Li, MS Broad, Z Zeng… - bioRxiv, 2022 - biorxiv.org
Spatial transcriptomics is an emerging technology to profile spatially resolved gene
expression. Its preserved capture locations allow researchers to investigate transcriptomes …