[PDF][PDF] Cations in charge: magnesium ions in RNA folding and catalysis

JC Bowman, TK Lenz, NV Hud… - Current opinion in …, 2012 - williams.chemistry.gatech.edu
Background When large RNAs fold into compact structures, negatively charged phosphate
groups are brought into close proximity. Compaction of RNA requires inorganic cations and …

Nucleic acid catalysis: metals, nucleobases, and other cofactors

WL Ward, K Plakos, VJ DeRose - Chemical reviews, 2014 - ACS Publications
The discovery of RNA-catalyzed phosphodiester bond cleavage by Cech and Altman in
1982− 1983 shattered the paradigm of protein-dependent biological catalysis and opened …

General strategies for RNA X-ray crystallography

RW Jackson, CM Smathers, AR Robart - Molecules, 2023 - mdpi.com
An extremely small proportion of the X-ray crystal structures deposited in the Protein Data
Bank are of RNA or RNA–protein complexes. This is due to three main obstacles to the …

Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold

JA Liberman, M Salim, J Krucinska… - Nature chemical …, 2013 - nature.com
PreQ1 riboswitches regulate genes by binding the pyrrolopyrimidine intermediate preQ1
during the biosynthesis of the essential tRNA base queuosine. We report what is to our …

Unwinding the twister ribozyme: from structure to mechanism

J Gebetsberger, R Micura - Wiley Interdisciplinary Reviews …, 2017 - Wiley Online Library
The twister ribozyme motif has been identified by bioinformatic means very recently.
Currently, four crystal structures with ordered active sites together with a series of chemical …

Ribozyme chemistry: To be or not to be under high pressure

MC Maurel, F Leclerc, G Hervé - Chemical reviews, 2019 - ACS Publications
The use of high hydrostatic pressure to investigate structure–function relationships in
biomacromolecules in solution provides precise information about conformational changes …

Identification of the Catalytic Mg2+ Ion in the Hepatitis Delta Virus Ribozyme

J Chen, A Ganguly, Z Miswan, S Hammes-Schiffer… - Biochemistry, 2013 - ACS Publications
The hepatitis delta virus ribozyme catalyzes an RNA cleavage reaction using a catalytic
nucleobase and a divalent metal ion. The catalytic base, C75, serves as a general acid and …

[图书][B] Lead: Its effects on environment and health

K Aoki, M Aschner, JT Cullen, E Farkas, M Filella… - 2017 - books.google.com
Volume 17, entitled Lead: Its Effects on Environment and Health of the series Metal Ions in
Life Sciences centers on the interrelations between biosystems and lead. The book provides …

[HTML][HTML] Structure and function analysis of a type III preQ1-I riboswitch from Escherichia coli reveals direct metabolite sensing by the Shine-Dalgarno sequence

GM Schroeder, D Kiliushik, JL Jenkins… - Journal of Biological …, 2023 - ASBMB
Riboswitches are small noncoding RNAs found primarily in the 5′ leader regions of
bacterial messenger RNAs where they regulate expression of downstream genes in …

Assessing the Potential Effects of Active Site Mg2+ Ions in the glmS Ribozyme–Cofactor Complex

S Zhang, DR Stevens, P Goyal… - The Journal of …, 2016 - ACS Publications
Ribozymes employ diverse catalytic strategies in their self-cleavage mechanisms, including
the use of divalent metal ions. This work explores the effects of Mg2+ ions in the active site of …