[PDF][PDF] Cations in charge: magnesium ions in RNA folding and catalysis
Background When large RNAs fold into compact structures, negatively charged phosphate
groups are brought into close proximity. Compaction of RNA requires inorganic cations and …
groups are brought into close proximity. Compaction of RNA requires inorganic cations and …
Nucleic acid catalysis: metals, nucleobases, and other cofactors
WL Ward, K Plakos, VJ DeRose - Chemical reviews, 2014 - ACS Publications
The discovery of RNA-catalyzed phosphodiester bond cleavage by Cech and Altman in
1982− 1983 shattered the paradigm of protein-dependent biological catalysis and opened …
1982− 1983 shattered the paradigm of protein-dependent biological catalysis and opened …
General strategies for RNA X-ray crystallography
RW Jackson, CM Smathers, AR Robart - Molecules, 2023 - mdpi.com
An extremely small proportion of the X-ray crystal structures deposited in the Protein Data
Bank are of RNA or RNA–protein complexes. This is due to three main obstacles to the …
Bank are of RNA or RNA–protein complexes. This is due to three main obstacles to the …
Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold
JA Liberman, M Salim, J Krucinska… - Nature chemical …, 2013 - nature.com
PreQ1 riboswitches regulate genes by binding the pyrrolopyrimidine intermediate preQ1
during the biosynthesis of the essential tRNA base queuosine. We report what is to our …
during the biosynthesis of the essential tRNA base queuosine. We report what is to our …
Unwinding the twister ribozyme: from structure to mechanism
J Gebetsberger, R Micura - Wiley Interdisciplinary Reviews …, 2017 - Wiley Online Library
The twister ribozyme motif has been identified by bioinformatic means very recently.
Currently, four crystal structures with ordered active sites together with a series of chemical …
Currently, four crystal structures with ordered active sites together with a series of chemical …
Ribozyme chemistry: To be or not to be under high pressure
MC Maurel, F Leclerc, G Hervé - Chemical reviews, 2019 - ACS Publications
The use of high hydrostatic pressure to investigate structure–function relationships in
biomacromolecules in solution provides precise information about conformational changes …
biomacromolecules in solution provides precise information about conformational changes …
Identification of the Catalytic Mg2+ Ion in the Hepatitis Delta Virus Ribozyme
J Chen, A Ganguly, Z Miswan, S Hammes-Schiffer… - Biochemistry, 2013 - ACS Publications
The hepatitis delta virus ribozyme catalyzes an RNA cleavage reaction using a catalytic
nucleobase and a divalent metal ion. The catalytic base, C75, serves as a general acid and …
nucleobase and a divalent metal ion. The catalytic base, C75, serves as a general acid and …
[图书][B] Lead: Its effects on environment and health
Volume 17, entitled Lead: Its Effects on Environment and Health of the series Metal Ions in
Life Sciences centers on the interrelations between biosystems and lead. The book provides …
Life Sciences centers on the interrelations between biosystems and lead. The book provides …
[HTML][HTML] Structure and function analysis of a type III preQ1-I riboswitch from Escherichia coli reveals direct metabolite sensing by the Shine-Dalgarno sequence
Riboswitches are small noncoding RNAs found primarily in the 5′ leader regions of
bacterial messenger RNAs where they regulate expression of downstream genes in …
bacterial messenger RNAs where they regulate expression of downstream genes in …
Assessing the Potential Effects of Active Site Mg2+ Ions in the glmS Ribozyme–Cofactor Complex
Ribozymes employ diverse catalytic strategies in their self-cleavage mechanisms, including
the use of divalent metal ions. This work explores the effects of Mg2+ ions in the active site of …
the use of divalent metal ions. This work explores the effects of Mg2+ ions in the active site of …