Coupling mRNA processing with transcription in time and space

DL Bentley - Nature Reviews Genetics, 2014 - nature.com
Maturation of mRNA precursors often occurs simultaneously with their synthesis by RNA
polymerase II (Pol II). The co-transcriptional nature of mRNA processing has permitted the …

Functions and regulation of RNA editing by ADAR deaminases

K Nishikura - Annual review of biochemistry, 2010 - annualreviews.org
One type of RNA editing converts adenosines to inosines (A→ I editing) in double-stranded
RNA (dsRNA) substrates. A→ I RNA editing is mediated by adenosine deaminase acting on …

[HTML][HTML] Mechanism of alternative splicing and its regulation

Y Wang, J Liu, BO Huang, YM Xu, J Li… - Biomedical …, 2015 - spandidos-publications.com
Alternative splicing of precursor mRNA is an essential mechanism to increase the
complexity of gene expression, and it plays an important role in cellular differentiation and …

Primary microRNA transcripts are processed co-transcriptionally

M Morlando, M Ballarino, N Gromak… - Nature structural & …, 2008 - nature.com
Abstract microRNAs (miRNAs) are generated from long primary (pri-) RNA polymerase II
(Pol II)–derived transcripts by two RNase III processing reactions: Drosha cleavage of …

[HTML][HTML] Adenosine deaminase that acts on RNA 3 (ADAR3) binding to glutamate receptor subunit B pre-mRNA inhibits RNA editing in glioblastoma

E Oakes, A Anderson, A Cohen-Gadol… - Journal of Biological …, 2017 - ASBMB
RNA editing is a cellular process that precisely alters nucleotide sequences, thus regulating
gene expression and generating protein diversity. Over 60% of human transcripts undergo …

Cracking the RNA polymerase II CTD code

S Egloff, S Murphy - Trends in genetics, 2008 - cell.com
The carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II comprises
multiple tandem conserved heptapeptide repeats, unique to this eukaryotic RNA …

[HTML][HTML] “Cotranscriptionality”: the transcription elongation complex as a nexus for nuclear transactions

R Perales, D Bentley - Molecular cell, 2009 - cell.com
Much of the complex process of RNP biogenesis takes place at the gene cotranscriptionally.
The target for RNA binding and processing factors is, therefore, not a solitary RNA molecule …

RNA editing in nascent RNA affects pre-mRNA splicing

YHE Hsiao, JH Bahn, Y Yang, X Lin, S Tran… - Genome …, 2018 - genome.cshlp.org
In eukaryotes, nascent RNA transcripts undergo an intricate series of RNA processing steps
to achieve mRNA maturation. RNA editing and alternative splicing are two major RNA …

Molecular diversity through RNA editing: a balancing act

S Farajollahi, S Maas - Trends in Genetics, 2010 - cell.com
RNA editing by adenosine deamination fuels the generation of RNA and protein diversity in
eukaryotes, particularly in higher organisms. This includes the recoding of translated exons …

Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila

G St Laurent, MR Tackett, S Nechkin… - Nature structural & …, 2013 - nature.com
The accurate and thorough genome-wide detection of adenosine-to-inosine editing, a
biologically indispensable process, has proven challenging. Here, we present a discovery …