The importance of catalytic promiscuity for enzyme design and evolution

RB Leveson-Gower, C Mayer, G Roelfes - Nature Reviews Chemistry, 2019 - nature.com
The ability of one enzyme to catalyse multiple, mechanistically distinct transformations likely
played a crucial role in organisms' abilities to adapt to changing external stimuli in the past …

Loop dynamics and the evolution of enzyme activity

M Corbella, GP Pinto, SCL Kamerlin - Nature Reviews Chemistry, 2023 - nature.com
In the early 2000s, Tawfik presented his 'New View'on enzyme evolution, highlighting the
role of conformational plasticity in expanding the functional diversity of limited repertoires of …

Macromolecular modeling with rosetta

R Das, D Baker - Annu. Rev. Biochem., 2008 - annualreviews.org
Advances over the past few years have begun to enable prediction and design of
macromolecular structures at near-atomic accuracy. Progress has stemmed from the …

Iterative approach to computational enzyme design

HK Privett, G Kiss, TM Lee… - Proceedings of the …, 2012 - National Acad Sciences
A general approach for the computational design of enzymes to catalyze arbitrary reactions
is a goal at the forefront of the field of protein design. Recently, computationally designed …

Evolution of a designed retro-aldolase leads to complete active site remodeling

L Giger, S Caner, R Obexer, P Kast, D Baker… - Nature chemical …, 2013 - nature.com
Evolutionary advances are often fueled by unanticipated innovation. Directed evolution of a
computationally designed enzyme suggests that pronounced molecular changes can also …

Role of conformational dynamics in the evolution of retro-aldolase activity

A Romero-Rivera, M Garcia-Borras, S Osuna - ACS catalysis, 2017 - ACS Publications
Enzymes exist as ensembles of conformations that are important for function. Tuning these
populations of conformational states through mutation enables evolution toward additional …

Understanding nature's catalytic toolkit

A Gutteridge, JM Thornton - Trends in biochemical sciences, 2005 - cell.com
Enzymes catalyse numerous reactions in nature, often causing spectacular accelerations in
the catalysis rate. One aspect of understanding how enzymes achieve these feats is to …

Acid− base bifunctional and dielectric outer-sphere effects in heterogeneous catalysis: A comparative investigation of model primary amine catalysts

JD Bass, A Solovyov, AJ Pascall… - Journal of the American …, 2006 - ACS Publications
Dielectric and acid− base bifunctional effects are elucidated in heterogeneous
aminocatalysis using a synthetic strategy based on bulk silica imprinting. Acid− base …

[图书][B] The organic chemistry of biological pathways

J McMurry, TP Begley - 2005 - books.google.com
Page 1 The Organic Chemistry OF BIOLOGICAL PATHWAYS COOH COOH OH COOH COOH
OH COOH HOOC OH John McMurry | Tadhg Begley Page 2 Page 3 Page 4 Page 5 The Organic …

Computational approaches: reaction trajectories, structures, and atomic motions. Enzyme reactions and proficiency

TC Bruice - Chemical reviews, 2006 - ACS Publications
In part, the purpose of this report is to give the experimental enzymologist a view of what
computational chemistry can offer. It is the author's opinion that computational procedures …