The importance of catalytic promiscuity for enzyme design and evolution
The ability of one enzyme to catalyse multiple, mechanistically distinct transformations likely
played a crucial role in organisms' abilities to adapt to changing external stimuli in the past …
played a crucial role in organisms' abilities to adapt to changing external stimuli in the past …
Loop dynamics and the evolution of enzyme activity
In the early 2000s, Tawfik presented his 'New View'on enzyme evolution, highlighting the
role of conformational plasticity in expanding the functional diversity of limited repertoires of …
role of conformational plasticity in expanding the functional diversity of limited repertoires of …
Macromolecular modeling with rosetta
Advances over the past few years have begun to enable prediction and design of
macromolecular structures at near-atomic accuracy. Progress has stemmed from the …
macromolecular structures at near-atomic accuracy. Progress has stemmed from the …
Iterative approach to computational enzyme design
A general approach for the computational design of enzymes to catalyze arbitrary reactions
is a goal at the forefront of the field of protein design. Recently, computationally designed …
is a goal at the forefront of the field of protein design. Recently, computationally designed …
Evolution of a designed retro-aldolase leads to complete active site remodeling
Evolutionary advances are often fueled by unanticipated innovation. Directed evolution of a
computationally designed enzyme suggests that pronounced molecular changes can also …
computationally designed enzyme suggests that pronounced molecular changes can also …
Role of conformational dynamics in the evolution of retro-aldolase activity
Enzymes exist as ensembles of conformations that are important for function. Tuning these
populations of conformational states through mutation enables evolution toward additional …
populations of conformational states through mutation enables evolution toward additional …
Understanding nature's catalytic toolkit
A Gutteridge, JM Thornton - Trends in biochemical sciences, 2005 - cell.com
Enzymes catalyse numerous reactions in nature, often causing spectacular accelerations in
the catalysis rate. One aspect of understanding how enzymes achieve these feats is to …
the catalysis rate. One aspect of understanding how enzymes achieve these feats is to …
Acid− base bifunctional and dielectric outer-sphere effects in heterogeneous catalysis: A comparative investigation of model primary amine catalysts
JD Bass, A Solovyov, AJ Pascall… - Journal of the American …, 2006 - ACS Publications
Dielectric and acid− base bifunctional effects are elucidated in heterogeneous
aminocatalysis using a synthetic strategy based on bulk silica imprinting. Acid− base …
aminocatalysis using a synthetic strategy based on bulk silica imprinting. Acid− base …
[图书][B] The organic chemistry of biological pathways
J McMurry, TP Begley - 2005 - books.google.com
Page 1 The Organic Chemistry OF BIOLOGICAL PATHWAYS COOH COOH OH COOH COOH
OH COOH HOOC OH John McMurry | Tadhg Begley Page 2 Page 3 Page 4 Page 5 The Organic …
OH COOH HOOC OH John McMurry | Tadhg Begley Page 2 Page 3 Page 4 Page 5 The Organic …
Computational approaches: reaction trajectories, structures, and atomic motions. Enzyme reactions and proficiency
TC Bruice - Chemical reviews, 2006 - ACS Publications
In part, the purpose of this report is to give the experimental enzymologist a view of what
computational chemistry can offer. It is the author's opinion that computational procedures …
computational chemistry can offer. It is the author's opinion that computational procedures …