Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic

SW Attwood, SC Hill, DM Aanensen… - Nature Reviews …, 2022 - nature.com
Determining the transmissibility, prevalence and patterns of movement of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) infections is central to our understanding …

Current and innovative methods for the diagnosis of COVID‑19 infection

L Falzone, G Gattuso, A Tsatsakis… - International …, 2021 - spandidos-publications.com
Abstract The Coronavirus Disease 2019 (COVID‑19) pandemic has forced the scientific
community to rapidly develop highly reliable diagnostic methods in order to effectively and …

Pervasive transmission of E484K and emergence of VUI-NP13L with evidence of SARS-CoV-2 co-infection events by two different lineages in Rio Grande do Sul …

R da Silva Francisco Jr, LF Benites, AP Lamarca… - Virus research, 2021 - Elsevier
Emergence of novel SARS-CoV-2 lineages are under the spotlight of the media, scientific
community and governments. Recent reports of novel variants in the United Kingdom, South …

COVID-19 diagnosis: current and future techniques

A Sharma, S Balda, M Apreja, K Kataria… - International Journal of …, 2021 - Elsevier
COVID-19 pandemic continues to be a global threat, affecting more than 200
countries/territories at both human and economic level. This necessitates the rapid …

[HTML][HTML] One year into the pandemic: Short-term evolution of SARS-CoV-2 and emergence of new lineages

F González-Candelas, MA Shaw, T Phan… - Infection, Genetics and …, 2021 - Elsevier
The COVID-19 pandemic was officially declared on March 11 th, 2020. Since the very
beginning, the spread of the virus has been tracked nearly in real-time by worldwide …

Evolution of SARS-CoV-2 in Spain during the first two years of the pandemic: circulating variants, amino acid conservation, and genetic variability in structural, non …

P Troyano-Hernáez, R Reinosa, Á Holguín - International Journal of …, 2022 - mdpi.com
Monitoring SARS-CoV-2's genetic diversity and emerging mutations in this ongoing
pandemic is crucial to understanding its evolution and ensuring the performance of COVID …

[HTML][HTML] Possible human-to-dog transmission of SARS-CoV-2, Italy, 2020

N Decaro, G Vaccari, A Lorusso, E Lorusso… - Emerging Infectious …, 2021 - ncbi.nlm.nih.gov
We detected severe acute respiratory syndrome coronavirus 2 in an otherwise healthy
poodle living with 4 family members who had coronavirus disease. We observed antibodies …

Emergence and spread of SARS-CoV-2 lineages B. 1.1. 7 and P. 1 in Italy

F Di Giallonardo, I Puglia, V Curini, C Cammà… - Viruses, 2021 - mdpi.com
Italy's second wave of SARS-CoV-2 has hit hard, with more than three million cases and
over 100,000 deaths, representing an almost ten-fold increase in the numbers reported by …

Long-term SARS-CoV-2 asymptomatic carriage in an immunocompromised host: clinical, immunological, and virological implications

M Spinicci, A Mazzoni, M Coppi, A Antonelli… - Journal of clinical …, 2022 - Springer
Purpose SARS-CoV-2 infection in immunocompromised hosts is challenging, and
prolonged viral shedding can be a common complication in these patients. We describe the …

Evaluation of next generation sequencing approaches for SARS-CoV-2

V Curini, M Ancora, L Jurisic, V Di Lollo, B Secondini… - Heliyon, 2023 - cell.com
Within public health control strategies for SARS-CoV-2, whole genome sequencing (WGS) is
essential for tracking viral spread and monitoring the emergence of variants which may …