Understanding the transcriptome through RNA structure
RNA structure is crucial for gene regulation and function. In the past, transcriptomes have
largely been parsed by primary sequences and expression levels, but it is now becoming …
largely been parsed by primary sequences and expression levels, but it is now becoming …
The human RBPome: from genes and proteins to human disease
RNA binding proteins (RBPs) play a central role in mediating post transcriptional regulation
of genes. However less is understood about them and their regulatory mechanisms. In this …
of genes. However less is understood about them and their regulatory mechanisms. In this …
Extensive transcriptional heterogeneity revealed by isoform profiling
Transcript function is determined by sequence elements arranged on an individual RNA
molecule. Variation in transcripts can affect messenger RNA stability, localization and …
molecule. Variation in transcripts can affect messenger RNA stability, localization and …
[PDF][PDF] Stress-induced translation inhibition through rapid displacement of scanning initiation factors
S Bresson, V Shchepachev, C Spanos, TW Turowski… - Molecular cell, 2020 - cell.com
Cellular responses to environmental stress are frequently mediated by RNA-binding
proteins (RBPs). Here, we examined global RBP dynamics in Saccharomyces cerevisiae in …
proteins (RBPs). Here, we examined global RBP dynamics in Saccharomyces cerevisiae in …
[HTML][HTML] Dynamical control enables the formation of demixed biomolecular condensates
Cellular matter can be organized into compositionally distinct biomolecular condensates.
For example, in Ashbya gossypii, the RNA-binding protein Whi3 forms distinct condensates …
For example, in Ashbya gossypii, the RNA-binding protein Whi3 forms distinct condensates …
[PDF][PDF] Transcriptome maps of mRNP biogenesis factors define pre-mRNA recognition
Biogenesis of eukaryotic messenger ribonucleoprotein complexes (mRNPs) involves the
synthesis, splicing, and 3′ processing of pre-mRNA, and the assembly of mature mRNPs …
synthesis, splicing, and 3′ processing of pre-mRNA, and the assembly of mature mRNPs …
Computational analysis of conserved RNA secondary structure in transcriptomes and genomes
SR Eddy - Annual review of biophysics, 2014 - annualreviews.org
Transcriptomics experiments and computational predictions both enable systematic
discovery of new functional RNAs. However, many putative noncoding transcripts arise …
discovery of new functional RNAs. However, many putative noncoding transcripts arise …
Finding the target sites of RNA‐binding proteins
X Li, H Kazan, HD Lipshitz… - Wiley Interdisciplinary …, 2014 - Wiley Online Library
RNA–protein interactions differ from DNA–protein interactions because of the central role of
RNA secondary structure. Some RNA‐binding domains (RBDs) recognize their target sites …
RNA secondary structure. Some RNA‐binding domains (RBDs) recognize their target sites …
Alternative polyadenylation diversifies post‐transcriptional regulation by selective RNA–protein interactions
Recent research has uncovered extensive variability in the boundaries of transcript isoforms,
yet the functional consequences of this variation remain largely unexplored. Here, we …
yet the functional consequences of this variation remain largely unexplored. Here, we …
A conserved mechanism of TOR-dependent RCK-mediated mRNA degradation regulates autophagy
G Hu, T McQuiston, A Bernard, YD Park, J Qiu… - Nature cell …, 2015 - nature.com
Autophagy is an essential eukaryotic pathway requiring tight regulation to maintain
homeostasis and preclude disease. Using yeast and mammalian cells, we report a …
homeostasis and preclude disease. Using yeast and mammalian cells, we report a …