Predicting the Effect of miRNA on Gene Regulation to Foster Translational Multiomics Research–A Thorough Review on the Role of ChIP-Seq Data

S Das, SN Rai - 2024 - preprints.org
Gene regulation is vital for cellular function and homeostasis, involving diverse mechanisms
controlling specific gene products and contributing to tissue-specific gene expression …

Overview of Computational and Experimental Methods to Identify Tissue-Specific MicroRNA Targets

U Schmitz - MicroRNA Detection and Target Identification: Methods …, 2023 - Springer
As ubiquitous posttranscriptional regulators of gene expression, microRNAs (miRNAs) play
key roles in cell physiology and function across taxa. In the last two decades, we have …

ARN: analysis and prediction by adipogenic professional database

Y Huang, L Wang, L Zan - BMC Systems Biology, 2016 - Springer
Adipogenesis is the process of cell differentiation by which mesenchymal stem cells become
adipocytes. Extensive research is ongoing to identify genes, their protein products, and …

Integrated analysis of microRNA and mRNA expression profiles in splenomegaly induced by non-cirrhotic portal hypertension in rats

J Saruwatari, C Dong, T Utsumi, M Tanaka… - Scientific reports, 2018 - nature.com
The spleen plays an important role in the immune and hematopoietic systems.
Splenomegaly is a frequent consequence of portal hypertension, but the underlying …

RNA sequencing and transcriptome analysis

ED Au, MH Farkas - Genetics and Genomics of Eye Disease, 2020 - Elsevier
RNA sequencing (RNA-Seq) studies have become the gold standard for high-throughput
transcriptome analysis. The amount of data produced by RNA-Seq is unparalleled, providing …

The DNA binding protein BCL6 regulates NFκB-controlled endothelial inflammatory gene expression

AF Acevedo, JJ Mack, NM Valenzuela - bioRxiv, 2022 - biorxiv.org
Background NFκB drives acute vascular inflammation by activating gene expression
programs in endothelial cells to promote leukocyte recruitment. Numerous negative …

Prediction of genes and protein-protein interaction networking for miR-221-5p using bioinformatics analysis

N Othman, S Sasidharan - Gene Reports, 2019 - Elsevier
Recent scientific investigations on P. longifolia leaf extract revealed its anti-cancer property
via the regulation of miR-221-5p. However, there were no further investigations performed to …

Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene Expression

E Destefanis, E Dassi - Post-Transcriptional Gene Regulation, 2022 - Springer
Untranslated regions of mRNA (UTRs) are involved in defining the fate of the transcript
through processes such as mRNA localization, degradation, translation initiation regulation …

Investigating the effects of platelet derived growth factor on the microRNA cargo content and function of vascular smooth muscle cell-derived extracellular vesicles

A Pashova - 2023 - theses.gla.ac.uk
Invasive revascularisation procedures such as coronary artery bypass grafting (CABG) and
percutaneous coronary intervention (PCI) are used to treat advanced atherosclerosis. The …

Applications of Boolean modelling to study and stratify dynamics of a complex disease

A Hemedan - 2023 - orbilu.uni.lu
Interpretation of omics data is needed to form meaningful hypotheses about disease
mechanisms. Pathway databases give an overview of disease-related processes, while …