[HTML][HTML] Proteomes are of proteoforms: embracing the complexity

K Carbonara, M Andonovski, JR Coorssen - Proteomes, 2021 - mdpi.com
Proteomes are complex—much more so than genomes or transcriptomes. Thus, simplifying
their analysis does not simplify the issue. Proteomes are of proteoforms, not canonical …

The evolution of two-dimensional gel electrophoresis-from proteomics to emerging alternative applications

PY Lee, N Saraygord-Afshari, TY Low - Journal of Chromatography A, 2020 - Elsevier
Abstract Two-dimensional gel electrophoresis (2-DE) is a technique that has been widely
applied in a variety of proteomics studies. It is capable of resolving complex protein mixtures …

Innovating the concept and practice of two-dimensional gel electrophoresis in the analysis of proteomes at the proteoform level

X Zhan, B Li, X Zhan, H Schlüter, PR Jungblut… - Proteomes, 2019 - mdpi.com
Two-dimensional gel electrophoresis (2DE) is an important and well-established technical
platform enabling extensive top-down proteomic analysis. However, the long-held but now …

Phosphoproteome analysis using two-dimensional electrophoresis coupled with chemical dephosphorylation

R Rodríguez-Vázquez, D Mouzo, C Zapata - Foods, 2022 - mdpi.com
Protein phosphorylation is a reversible post-translational modification (PTM) with major
regulatory roles in many cellular processes. However, the analysis of phosphoproteins …

Inventory of proteoforms as a current challenge of proteomics: Some technical aspects

S Naryzhny - Journal of proteomics, 2019 - Elsevier
The main intricacy in the human proteome is that it is tremendously complex and composed
from diverse and heterogeneous gene products. These products are called protein species …

Gaining insights into cancer biology through exploration of the cancer secretome using proteomic and bioinformatic tools

E Papaleo, I Gromova, P Gromov - Expert Review of Proteomics, 2017 - Taylor & Francis
Introduction: Tumor-associated proteins released by cancer cells and by tumor stroma cells,
referred as 'cancer secretome', represent a valuable resource for discovery of potential …

Gel-based proteomics of clinical samples identifies potential serological biomarkers for early detection of colorectal cancer

SF Thorsen, I Gromova, IJ Christensen… - International Journal of …, 2019 - mdpi.com
The burden of colorectal cancer (CRC) is considerable—approximately 1.8 million people
are diagnosed each year with CRC and of these about half will succumb to the disease. In …

Proteomics—The State of the Field: The Definition and Analysis of Proteomes Should Be Based in Reality, Not Convenience

JR Coorssen, MP Padula - Proteomes, 2024 - mdpi.com
With growing recognition and acknowledgement of the genuine complexity of proteomes, we
are finally entering the post-proteogenomic era. Routine assessment of proteomes as …

Nanomedicine and phage capsids

P Serwer, ET Wright - Viruses, 2018 - mdpi.com
Studies of phage capsids have at least three potential interfaces with nanomedicine. First,
investigation of phage capsid states potentially will provide therapies targeted to similar …

Variety and dynamics of proteoforms in the human proteome: aspects of markers for hepatocellular carcinoma

S Naryzhny, V Zgoda, A Kopylov, E Petrenko, O Kleist… - Proteomes, 2017 - mdpi.com
We have previously developed an approach, where two-dimensional gel electrophoresis
(2DE) was used, followed by sectional analysis of the whole gel using high-resolution nano …