A brave new world of RNA-binding proteins
RNA-binding proteins (RBPs) are typically thought of as proteins that bind RNA through one
or multiple globular RNA-binding domains (RBDs) and change the fate or function of the …
or multiple globular RNA-binding domains (RBDs) and change the fate or function of the …
Regulation by 3′-untranslated regions
C Mayr - Annual review of genetics, 2017 - annualreviews.org
3′-untranslated regions (3′-UTRs) are the noncoding parts of mRNAs. Compared to
yeast, in humans, median 3′-UTR length has expanded approximately tenfold alongside …
yeast, in humans, median 3′-UTR length has expanded approximately tenfold alongside …
[PDF][PDF] Comprehensive identification of RNA-binding domains in human cells
Mammalian cells harbor more than a thousand RNA-binding proteins (RBPs), with half of
these employing unknown modes of RNA binding. We developed RBDmap to determine the …
these employing unknown modes of RNA binding. We developed RBDmap to determine the …
The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs
BM Beckmann, R Horos, B Fischer, A Castello… - Nature …, 2015 - nature.com
RNA-binding proteins (RBPs) exert a broad range of biological functions. To explore the
scope of RBPs across eukaryotic evolution, we determined the in vivo RBP repertoire of the …
scope of RBPs across eukaryotic evolution, we determined the in vivo RBP repertoire of the …
The RNA-binding protein repertoire of embryonic stem cells
RNA-binding proteins (RBPs) have essential roles in RNA-mediated gene regulation, and
yet annotation of RBPs is limited mainly to those with known RNA-binding domains. To …
yet annotation of RBPs is limited mainly to those with known RNA-binding domains. To …
RNA-binding proteins in bacteria
E Holmqvist, J Vogel - Nature Reviews Microbiology, 2018 - nature.com
RNA-binding proteins (RBPs) are central to most if not all cellular processes, dictating the
fate of virtually all RNA molecules in the cell. Starting with pioneering work on ribosomal …
fate of virtually all RNA molecules in the cell. Starting with pioneering work on ribosomal …
[PDF][PDF] The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
AG Baltz, M Munschauer, B Schwanhäusser, A Vasile… - Molecular cell, 2012 - cell.com
Protein-RNA interactions are fundamental to core biological processes, such as mRNA
splicing, localization, degradation, and translation. We developed a photoreactive …
splicing, localization, degradation, and translation. We developed a photoreactive …
[PDF][PDF] Principles and properties of eukaryotic mRNPs
SF Mitchell, R Parker - Molecular cell, 2014 - cell.com
The proper processing, export, localization, translation, and degradation of mRNAs are
necessary for regulation of gene expression. These processes are controlled by mRNA …
necessary for regulation of gene expression. These processes are controlled by mRNA …
[HTML][HTML] Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
A Castello, B Fischer, K Eichelbaum, R Horos… - Cell, 2012 - cell.com
RNA-binding proteins (RBPs) determine RNA fate from synthesis to decay. Employing two
complementary protocols for covalent UV crosslinking of RBPs to RNA, we describe a …
complementary protocols for covalent UV crosslinking of RBPs to RNA, we describe a …
Predicting RNA-protein interactions using only sequence information
Background RNA-protein interactions (RPIs) play important roles in a wide variety of cellular
processes, ranging from transcriptional and post-transcriptional regulation of gene …
processes, ranging from transcriptional and post-transcriptional regulation of gene …