A precision medicine initiative for Alzheimer's disease: the road ahead to biomarker-guided integrative disease modeling

H Hampel, SE O'Bryant, S Durrleman, E Younesi… - …, 2017 - Taylor & Francis
After intense scientific exploration and more than a decade of failed trials, Alzheimer's
disease (AD) remains a fatal global epidemic. A traditional research and drug development …

Symptom tracking in endometriosis using digital technologies: Knowns, unknowns, and future prospects

K Edgley, AW Horne, PTK Saunders, A Tsanas - Cell Reports Medicine, 2023 - cell.com
Endometriosis is a common chronic pain condition with no known cure and limited treatment
options. Digital technologies, ranging from smartphone apps to wearable sensors, have …

Population modeling of tumor growth curves and the reduced Gompertz model improve prediction of the age of experimental tumors

C Vaghi, A Rodallec, R Fanciullino… - PLoS computational …, 2020 - journals.plos.org
Tumor growth curves are classically modeled by means of ordinary differential equations. In
analyzing the Gompertz model several studies have reported a striking correlation between …

CD8+ T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production

BB Policicchio, EF Cardozo-Ojeda, C Xu, D Ma… - Nature …, 2023 - nature.com
Whether CD8+ T lymphocytes control human immunodeficiency virus infection by cytopathic
or non-cytopathic mechanisms is not fully understood. Multiple studies highlighted non …

Fedpop: A bayesian approach for personalised federated learning

N Kotelevskii, M Vono, A Durmus… - Advances in Neural …, 2022 - proceedings.neurips.cc
Personalised federated learning (FL) aims at collaboratively learning a machine learning
model tailored for each client. Albeit promising advances have been made in this direction …

Antiretroviral therapy reveals triphasic decay of intact SIV genomes and persistence of ancestral variants

EJ Fray, F Wu, FR Simonetti, C Zitzmann… - Cell host & …, 2023 - cell.com
The decay kinetics of HIV-1-infected cells are critical to understand virus persistence. We
evaluated the frequency of simian immunodeficiency virus (SIV)-infected cells for 4 years of …

Parameter estimation in nonlinear mixed effect models using saemix, an R implementation of the SAEM algorithm

E Comets, A Lavenu, M Lavielle - Journal of Statistical Software, 2017 - jstatsoft.org
The saemix package for R provides maximum likelihood estimates of parameters in
nonlinear mixed effect models, using a modern and efficient estimation algorithm, the …

Mathematical modeling of tumor growth and metastatic spreading: validation in tumor-bearing mice

N Hartung, S Mollard, D Barbolosi, A Benabdallah… - Cancer research, 2014 - AACR
Defining tumor stage at diagnosis is a pivotal point for clinical decisions about patient
treatment strategies. In this respect, early detection of occult metastasis invisible to current …

Metabolic Profiling of Human Long-Term Liver Models and Hepatic Clearance Predictions from In Vitro Data Using Nonlinear Mixed-Effects Modeling

NA Kratochwil, C Meille, S Fowler, F Klammers… - The AAPS journal, 2017 - Springer
Early prediction of human clearance is often challenging, in particular for the growing
number of low-clearance compounds. Long-term in vitro models have been developed …

Ebola viral dynamics in nonhuman primates provides insights into virus immuno-pathogenesis and antiviral strategies

V Madelain, S Baize, F Jacquot, S Reynard… - Nature …, 2018 - nature.com
Despite several clinical trials implemented, no antiviral drug could demonstrate efficacy
against Ebola virus. In non-human primates, early initiation of polymerase inhibitors …