The Sorghum bicolor genome and the diversification of grasses

AH Paterson, JE Bowers, R Bruggmann, I Dubchak… - Nature, 2009 - nature.com
Sorghum, an African grass related to sugar cane and maize, is grown for food, feed, fibre
and fuel. We present an initial analysis of the∼ 730-megabase Sorghum bicolor (L.) …

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

JA Banks, T Nishiyama, M Hasebe, JL Bowman… - science, 2011 - science.org
Vascular plants appeared~ 410 million years ago, then diverged into several lineages of
which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We …

PGDD: a database of gene and genome duplication in plants

TH Lee, H Tang, X Wang, AH Paterson - Nucleic acids research, 2012 - academic.oup.com
Genome duplication (GD) has permanently shaped the architecture and function of many
higher eukaryotic genomes. The angiosperms (flowering plants) are outstanding models in …

ALLMAPS: robust scaffold ordering based on multiple maps

H Tang, X Zhang, C Miao, J Zhang, R Ming… - Genome biology, 2015 - Springer
The ordering and orientation of genomic scaffolds to reconstruct chromosomes is an
essential step during de novo genome assembly. Because this process utilizes various …

Large-scale analyses of angiosperm nucleotide-binding site-leucine-rich repeat genes reveal three anciently diverged classes with distinct evolutionary patterns

ZQ Shao, JY Xue, P Wu, YM Zhang, Y Wu… - Plant …, 2016 - academic.oup.com
Nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes make up the largest plant
disease resistance gene family (R genes), with hundreds of copies occurring in individual …

Abscisic-acid-dependent basic leucine zipper (bZIP) transcription factors in plant abiotic stress

A Banerjee, A Roychoudhury - Protoplasma, 2017 - Springer
One of the major causes of significant crop loss throughout the world is the myriad of
environmental stresses including drought, salinity, cold, heavy metal toxicity, and ultraviolet …

The evolutionary significance of ancient genome duplications

Y Van de Peer, S Maere, A Meyer - Nature Reviews Genetics, 2009 - nature.com
Many organisms are currently polyploid, or have a polyploid ancestry and now have
secondarily'diploidized'genomes. This finding is surprising because retained whole-genome …

A heterozygous moth genome provides insights into herbivory and detoxification

M You, Z Yue, W He, X Yang, G Yang, M Xie, D Zhan… - Nature …, 2013 - nature.com
How an insect evolves to become a successful herbivore is of profound biological and
practical importance. Herbivores are often adapted to feed on a specific group of …

Anther and pollen development: a conserved developmental pathway

JF Gómez, B Talle, ZA Wilson - Journal of integrative plant …, 2015 - Wiley Online Library
Pollen development is a critical step in plant development that is needed for successful
breeding and seed formation. Manipulation of male fertility has proved a useful trait for …

[图书][B] Evolution: a view from the 21st century

JA Shapiro - 2011 - books.google.com
James A. Shapiro proposes an important new paradigm for understanding biological
evolution, the core organizing principle of biology. Shapiro introduces crucial new molecular …