Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication

X Feng, Q Chen, W Wu, J Wang, G Li, S Xu… - Nature …, 2024 - nature.com
Abstract Whole-genome duplication (WGD), or polyploidy, events are widespread and
significant in the evolutionary history of angiosperms. However, empirical evidence for …

Telomere-to-telomere haplotype-resolved reference genome reveals subgenome divergence and disease resistance in triploid Cavendish banana

HR Huang, X Liu, R Arshad, X Wang, WM Li… - Horticulture …, 2023 - academic.oup.com
Banana is one of the most important crops of the world. Cavendish-type bananas, which
have a monospecific Musa acuminata origin (AAA), account for around half of the global …

[HTML][HTML] Homoeologs: what are they and how do we infer them?

NM Glover, H Redestig, C Dessimoz - Trends in plant science, 2016 - cell.com
The evolutionary history of nearly all flowering plants includes a polyploidization event.
Homologous genes resulting from allopolyploidy are commonly referred to as 'homoeologs' …

Genome sequence and evolution of Betula platyphylla

S Chen, Y Wang, L Yu, T Zheng, S Wang… - Horticulture …, 2021 - academic.oup.com
Betula L.(birch) is a pioneer hardwood tree species with ecological, economic, and
evolutionary importance in the Northern Hemisphere. We sequenced the Betula platyphylla …

Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family

W Dong, E Li, Y Liu, C Xu, Y Wang, K Liu, X Cui, J Sun… - BMC biology, 2022 - Springer
Background Deep-branching phylogenetic relationships are often difficult to resolve
because phylogenetic signals are obscured by the long history and complexity of …

The sage genome provides insight into the evolutionary dynamics of diterpene biosynthesis gene cluster in plants

CY Li, L Yang, Y Liu, ZG Xu, J Gao, YB Huang, JJ Xu… - Cell reports, 2022 - cell.com
The widely cultivated medicinal and ornamental plant sage (Salvia officinalis L.) is an
evergreen shrub of the Lamiaceae family, native to the Mediterranean. We assembled a …

A high-quality reference genome of wild Cannabis sativa

S Gao, B Wang, S Xie, X Xu, J Zhang, L Pei… - Horticulture …, 2020 - academic.oup.com
Cannabis sativa is a well-known plant species that has great economic and ecological
significance. An incomplete genome of cloned C. sativa was obtained by using …

Genome-Wide Analysis Reveals the Potential Role of MYB Transcription Factors in Floral Scent Formation in Hedychium coronarium

F Abbas, Y Ke, Y Zhou, Y Yu, M Waseem… - Frontiers in Plant …, 2021 - frontiersin.org
The MYB gene family is one of the largest groups of transcription factors (TFs) playing
diverse roles in several biological processes. Hedychium coronarium (white ginger lily) is a …

ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression

Y Aoki, Y Okamura, S Tadaka, K Kinoshita… - Plant and Cell …, 2016 - academic.oup.com
Abstract ATTED-II (http://atted. jp) is a coexpression database for plant species with parallel
views of multiple coexpression data sets and network analysis tools. The user can efficiently …

Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum

MA Hardigan, E Crisovan, JP Hamilton, J Kim… - The Plant …, 2016 - academic.oup.com
Clonally reproducing plants have the potential to bear a significantly greater mutational load
than sexually reproducing species. To investigate this possibility, we examined the breadth …