DNA transport through the dynamic type IV secretion system

ME Ryan, PP Damke, CL Shaffer - Infection and Immunity, 2023 - Am Soc Microbiol
The versatile type IV secretion system (T4SS) nanomachine plays a pivotal role in bacterial
pathogenesis and the propagation of antibiotic resistance determinants throughout microbial …

Divorcing strain classification from species names

DA Baltrus - Trends in microbiology, 2016 - cell.com
Confusion about strain classification and nomenclature permeates modern microbiology.
Although taxonomists have traditionally acted as gatekeepers of order, the numbers of, and …

Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains

JL Draper, LM Hansen, DL Bernick, S Abedrabbo… - MBio, 2017 - Am Soc Microbiol
Many bacterial genomes are highly variable but nonetheless are typically published as a
single assembled genome. Experiments tracking bacterial genome evolution have not …

Helicobacter pylori antibody patterns in Germany: a cross-sectional population study

A Michel, M Pawlita, H Boeing, L Gissmann… - Gut pathogens, 2014 - Springer
Background Helicobacter pylori infection that is usually acquired in childhood and lasts for
lifetime is mostly asymptomatic but associated with severe gastrointestinal disease including …

Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution

H Enav, I Paz, RE Ley - Nature Biotechnology, 2024 - nature.com
Microbial species diversify into strains through single-nucleotide mutations and structural
changes, such as recombination, insertions and deletions. Most strain-comparison methods …

Helicobacter pylori triggers inflammation and oncogenic transformation by perturbing the immune microenvironment

X Wang, G Zhao, S Shao, Y Yao - … et Biophysica Acta (BBA)-Reviews on …, 2024 - Elsevier
The immune microenvironment plays a critical regulatory role in the pathogenesis of
Helicobacter pylori (H. pylori). Understanding the mechanisms that drive the transition from …

Rearrangement analysis of multiple bacterial genomes

M Noureen, I Tada, T Kawashima, M Arita - BMC bioinformatics, 2019 - Springer
Background Genomes are subjected to rearrangements that change the orientation and
ordering of genes during evolution. The most common rearrangements that occur in uni …

Comparative analysis of the full genome of Helicobacter pylori isolate Sahul64 identifies genes of high divergence

W Lu, MJ Wise, CY Tay, HM Windsor… - Journal of …, 2014 - Am Soc Microbiol
Isolates of Helicobacter pylori can be classified phylogeographically. High genetic diversity
and rapid microevolution are a hallmark of H. pylori genomes, a phenomenon that is …

Helicobacter pylori biofilm: a protective environment for bacterial recombination

R Grande, E Di Campli, S Di Bartolomeo… - Journal of applied …, 2012 - academic.oup.com
Aims The aim of this work was to investigate the interaction between two Helicobacter pylori
strains in promoting genetic transfer, when grown in the biofilm mode. Methods and Results …

Helicobacter pylori: enemy, commensal or, sometimes, friend?

MB Whalen, O Massidda - The Journal of Infection in Developing Countries, 2015 - jidc.org
Helicobacter pylori is a Gram-negative ε-proteobacterium that colonizes about 50% of
humans. Some pertinent characteristics are that it can survive the acid of the stomach …