Cryptic species as a window into the paradigm shift of the species concept

C Fišer, CT Robinson, F Malard - Molecular Ecology, 2018 - Wiley Online Library
The species concept is the cornerstone of biodiversity science, and any paradigm shift in the
delimitation of species affects many research fields. Many biologists now are embracing a …

[HTML][HTML] Marine biodiversity, biogeography, deep-sea gradients, and conservation

MJ Costello, C Chaudhary - Current Biology, 2017 - cell.com
The oceans appear ideal for biodiversity—they have unlimited water, a large area, are well
connected, have less extreme temperatures than on land, and contain more phyla and …

Enumerating soil biodiversity

MA Anthony, SF Bender… - Proceedings of the …, 2023 - National Acad Sciences
Soil is an immense habitat for diverse organisms across the tree of life, but just how many
organisms live in soil is surprisingly unknown. Previous efforts to enumerate soil biodiversity …

A general species delimitation method with applications to phylogenetic placements

J Zhang, P Kapli, P Pavlidis, A Stamatakis - Bioinformatics, 2013 - academic.oup.com
Motivation: Sequence-based methods to delimit species are central to DNA taxonomy,
microbial community surveys and DNA metabarcoding studies. Current approaches either …

[图书][B] Species concepts in biology

FE Zachos - 2016 - Springer
The species problem has triggered the publication of an almost infinite number of theoretical
and practical studies, including quite a number of books. I should, therefore, perhaps briefly …

Coalescent-based species delimitation in an integrative taxonomy

MK Fujita, AD Leaché, FT Burbrink, JA McGuire… - Trends in ecology & …, 2012 - cell.com
The statistical rigor of species delimitation has increased dramatically over the past decade.
Coalescent theory provides powerful models for population genetic inference, and is now …

[HTML][HTML] The integrative future of taxonomy

JM Padial, A Miralles, I De la Riva, M Vences - Frontiers in zoology, 2010 - Springer
Background Taxonomy is the biological discipline that identifies, describes, classifies and
names extant and extinct species and other taxa. Nowadays, species taxonomy is …

The seven deadly sins of DNA barcoding

RA Collins, RH Cruickshank - Molecular ecology resources, 2013 - Wiley Online Library
Despite the broad benefits that DNA barcoding can bring to a diverse range of biological
disciplines, a number of shortcomings still exist in terms of the experimental design of …

Towards large-scale integrative taxonomy (LIT): resolving the data conundrum for dark taxa

E Hartop, A Srivathsan, F Ronquist… - Systematic Biology, 2022 - academic.oup.com
Abstract New, rapid, accurate, scalable, and cost-effective species discovery and
delimitation methods are needed for tackling “dark taxa,” here defined as groups for which …

Species concepts and species delimitation

K De Queiroz - Systematic biology, 2007 - academic.oup.com
The issue of species delimitation has long been confused with that of species
conceptualization, leading to a half century of controversy concerning both the definition of …