Comparison of metagenomics and metatranscriptomics tools: a guide to making the right choice

LC Terrón-Camero, F Gordillo-González… - Genes, 2022 - mdpi.com
The study of microorganisms is a field of great interest due to their environmental (eg, soil
contamination) and biomedical (eg, parasitic diseases, autism) importance. The advent of …

A survey of software tools for microRNA discovery and characterization using RNA-seq

M Bortolomeazzi, E Gaffo… - Briefings in bioinformatics, 2019 - academic.oup.com
Since the small RNA-sequencing (sRNA-seq) technology became available, it allowed the
discovery of thousands new microRNAs (miRNAs) in humans and many other species …

Identification and Functional Verification Reveals that miR-195 Inhibiting THRSP to Affect Fat Deposition in Xinyang Buffalo

S Wang, C Pan, X Ma, C Yang, L Tang, J Huang… - Frontiers in …, 2021 - frontiersin.org
The buffalo population is extensive in China, but its meat quality is relatively inferior.
Therefore, improving meat quality should be one of the breeding goals. microRNAs …

RNA-Seq, Bioinformatic Identification of Potential MicroRNA-like Small RNAs in the Edible Mushroom Agaricus bisporus and Experimental Approach for Their …

FR Marin, A Dávalos, D Kiltschewskij… - International Journal of …, 2022 - mdpi.com
Although genomes from many edible mushrooms are sequenced, studies on fungal micro
RNAs (miRNAs) are scarce. Most of the bioinformatic tools are designed for plants or …

MicroRNA databases and tools

TS de Amorim, DLF Pedro, AR Paschoal - miRNomics: MicroRNA Biology …, 2022 - Springer
In this era of big data, sets of methodologies and strategies are designed to extract
knowledge from huge volumes of data. However, the cost of where and how to get this …

SUMOylated SNF2PH promotes variant surface glycoprotein expression in bloodstream trypanosomes

A Saura, PA Iribarren, D Rojas‐Barros, JM Bart… - EMBO …, 2019 - embopress.org
SUMO ylation is a post‐translational modification that positively regulates monoallelic
expression of the trypanosome variant surface glycoprotein (VSG). The presence of a highly …

[HTML][HTML] The involvement of serum exosomal miR-500-3p and miR-770-3p in aging: modulation by calorie restriction

EK Lee, HO Jeong, EJ Bang, CH Kim, JY Mun, S Noh… - Oncotarget, 2018 - ncbi.nlm.nih.gov
Recent studies have shown a role for miRNAs in aging and age-related diseases, and the
modulation of miRNA expression by diet attracts attention as a new therapeutic strategy …

Modulation of Cholesterol Pathways in Human Macrophages Infected by Clinical Isolates of Leishmania infantum

JI Manzano, A Perea-Martínez… - Frontiers in Cellular …, 2022 - frontiersin.org
To increase our understanding of factors contributing to therapeutic failure (TF) in
leishmaniasis, we have studied some plasma membrane features of host THP-1 cells …

DIANA-mAP: analyzing miRNA from raw NGS data to quantification

A Alexiou, D Zisis, I Kavakiotis, M Miliotis… - Genes, 2020 - mdpi.com
microRNAs (miRNAs) are small non-coding RNAs (~ 22 nts) that are considered central post-
transcriptional regulators of gene expression and key components in many pathological …

Computational tools for microRNA target prediction

NS Ab Mutalib, SA Sulaiman, R Jamal - Computational epigenetics and …, 2019 - Elsevier
MicroRNAs (miRNAs) are short, noncoding RNA species which play important roles in gene
regulation. With the advancement in the next-generation sequencing technologies, many …